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Data from: Phylogenomic data reveal reticulation and incongruence among mitochondrial candidate species in Dusky Salamanders (Desmognathus)
负责人:
关键词:
Anchored Hybrid Enrichment;phylogenetic networks;candidate species;Desmognathus
DOI:
doi:10.5061/dryad.34tmpg4g1
摘要:
and delimit species, as well as confound attempts to estimate phylogenetic relationships. A conspicuous example is Dusky Salamanders (Desmognathus
Data from: Constructing phylogenies in the presence of Intra-Individual Site Polymorphisms (2ISPs) with a focus on the nuclear ribosomal cistron
负责人:
关键词:
Nuclear DNA;phylogeny reconstruction;intra-individual site polymorphism;phylogenetic networks
DOI:
doi:10.5061/dryad.21jj2
摘要:
Nuclear DNA is widely used to estimate phylogenetic and phylogeographic relationships. Nuclear gene variants may be present in an individual's ge
Data from: Multiple refugia and barriers explain the phylogeography of the Valais shrew, Sorex antinorii (Mammalia: Soricomorpha)
负责人:
关键词:
Sorex araneus;refugia within refugia;Niche Modelling;Isolation by resistance;Sorex arunchi;Sorex antinorii;phylogeography;cytochrome b;Pleistocene
DOI:
doi:10.5061/dryad.2jj36325
摘要:
e included in the analysis. The phylogeographical pattern was assessed by Bayesian molecular phylogenetic reconstruction, population genetic
- and intraspecific genetic differentiation
负责人:
关键词:
Ommatotritun nesterovi;Oligocene till present;historical biogeography;molecular dating;phylogeny;Ommatotriton vittatus;Species distribution modelling;Ommatotriton ophryticus;Oligocene to present
DOI:
doi:10.5061/dryad.4q08q
摘要:
we constructed phylogenetic trees and haplotype networks. Species trees were constructed for all markers and nuDNA only. Species distribution models were projected
Data from: Accurate inference of tree topologies from multiple sequence alignments using deep learning
负责人:
关键词:
Supervised Machine Learning;convolutional neuronal network;phylogenetics
DOI:
doi:10.5061/dryad.ct2895s
摘要:
Reconstructing the phylogenetic relationships between species is one of the most formidable tasks in evolutionary biology. Multiple methods exist
Data from: Genetic diversity and population history of the endangered killifish Aphanius baeticus
负责人:
关键词:
Pleistocene glaciations;conservation;Aphanius baeticus;present time;Conservation genetics and biodiversity;Population structure and phylogeography;Cyprinodontidae;secondary water fishes;Pleistocene
DOI:
doi:10.5061/dryad.1qs5c
摘要:
ross its distribution range. The phylogenetic and networking reconstruction revealed subtle phylogeographic structuring. A scattered expansion at the begi
Data from: An integrated pathway for building regional phylogenies for ecological studies
负责人:
关键词:
metadata;Bayesian phylogenetics;DNA sequences;marine fishes;Actinopterygii;280 Million years;New Zealand;topological constraints;super-matrix;regional species pool;geo-referencing;community phylogenetics;Exclusive Economic Zone
DOI:
doi:10.5061/dryad.2v4h7bv
摘要:
me-calibrated trees suitable to address ecological questions. The novel contributions of regPhylo include options to: use prior phylogenetic knowledge throug
Data from: Phylogenetic marker development for target enrichment from transcriptome and genome skim data: the pipeline and its applicati
负责人:
关键词:
Species tree;cytonuclear discordance;Target Enrichment;low-copy nuclear genes;Oxalis;genome skimming
DOI:
doi:10.5061/dryad.dn08t
摘要:
Phylogenetics benefits from using a large number of putatively independent nuclear loci and their combination with other sources of information, suc
Data from: The mitogenome of freshwater loach Homatula laxiclathra (Teleostei: Nemacheilidae) with phylogenetic analysis of Nemacheilidae
负责人:
关键词:
mitogenome;freshwater loach;Homatula laxiclathra;Qinling Mountains;China;Evolution
DOI:
doi:10.5061/dryad.nvx0k6dnz
摘要:
-phylogenomic analysis of 46 Nemacheilidae species arranged H. laxiclathra in a robust monophyletic Homatula cluster with other Homatula species. The results ma

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