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Data from: Effective online Bayesian phylogenetics via sequential Monte Carlo with guided proposals
负责人:
关键词:
phylogenetics;sequential Monte Carlo;Online Inference;Bayesian inference
DOI:
doi:10.5061/dryad.n7n85
摘要:
Modern infectious disease outbreak surveillance produces continuous streams of sequence data which require phylogenetic analysis as data arrives
Data from: The biogeography of deep time phylogenetic reticulation
负责人:
关键词:
Neural networks;Lampropeltis;kingsnakes;Miocene;hybridization;Pliocene;Pleistocene
DOI:
doi:10.5061/dryad.4qs50
摘要:
Most phylogenies are typically represented as purely bifurcating. However, as genomic data has become more common in phylogenetic
Data from: A simple approach for maximizing the overlap of phylogenetic and comparative data
负责人:
关键词:
data imputation;Embryophyta;phylogenetic comparative method;taxonomy;missing data
DOI:
doi:10.5061/dryad.5d3rq
摘要:
Biologists are increasingly using curated, public data sets to conduct phylogenetic comparative analyses. Unfortunately, there is often a mismatch
Data from: A multilocus phylogeny of the fish genus Poeciliopsis: solving taxonomic uncertainties and preliminary evidence of reticulation
负责人:
关键词:
Poeciliopsis;Biogeography;Reticulation;Trans Mexican Volcanic Belt;species trees;hybridization;phylogenetic networks
DOI:
doi:10.5061/dryad.s0b85c2
摘要:
The fish genus Poeciliopsis constitutes a valuable research system for evolutionary ecology, whose phylogenetic relationships hav
Data from: Phylogenomic signatures of ancient introgression in a rogue lineage of darters (Teleostei: Percidae)
负责人:
关键词:
Crystallaria;RADseq;Ammocrypta;Etheostoma;Perca;Ancient hybridization;Darters;Percina;Sander;phylogenomics;Nothonotus;Etheostomatinae;phylogenetic networks;Allohistium
DOI:
doi:10.5061/dryad.1c9g5mm
摘要:
Evolutionary history is typically portrayed as a branching phylogenetic tree, yet not all evolution proceeds in a purely bifurcating manne
Data from: A framework phylogeny of the American oak clade based on sequenced RAD data
负责人:
关键词:
Expressed sequence tags (EST);Quercus;Next-generation sequencing;plant systematics;Fagaceae;restriction-site associated DNA;partitioned RAD;phylogenomics
DOI:
doi:10.5061/dryad.ts2hj
摘要:
whose crown age is estimated at 23–33 million years old. Using a recently developed analytical pipeline for RAD-Seq phylogenetics, we created
Data from: Using supermatrices for phylogenetic inquiry: an example using the sedges
负责人:
关键词:
Paleocene;decisiveness;diversitree;Eocene;Cretaceous;mega-phylogeny;BiSSE;latitudinal diversity gradient;Pliocene;phlawd;Supermatrix;Oligocene;Cyperaceae;Miocene;Holocene;Pleistocene
DOI:
doi:10.5061/dryad.6p76c3pb
摘要:
le on GenBank. We explore the properties of these trees and their utility for phylogenetic inference, and show that even the highly incomplete alignments
Data from: Inferring HIV-1 transmission networks and sources of epidemic spread in Africa with deep-sequence phylogenetic analysis
负责人:
关键词:
Transmission networks;HIV;Infectious disease epidemiology;2011-2015;phylogenetics;Deep-sequence phylogenetics;HIV prevention;Phylodynamics
DOI:
doi:10.5061/dryad.7h46hg2
摘要:
, and infer the direction of transmission within them at an estimated error rate of 16.3% [8.8–28.3%]. With this error rate, deep-sequence phylogenetics cann
Data from: Quantifying species contributions to ecosystem processes: a global assessment of functional trait and phylogenetic metrics across avian
负责人:
关键词:
functional diversity;ecosystem function;interaction network;Seed dispersal;Functional traits;phylogenetic diversity;present day;Aves;Holocene;ecological network;mutualism
DOI:
doi:10.5061/dryad.2br2b
摘要:
ons and services they provide, but also how these factors relate to measurable indices, such as functional traits and phylogenetic diversity. However, these
Data from: FlatNJ: a novel network-based approach to visualize evolutionary and biogeographical relationships
负责人:
关键词:
split network;split;phylogenetic network;QNet;flat split system;NeighborNet
DOI:
doi:10.5061/dryad.q80f6
摘要:
Split networks are a type of phylogenetic network that allow visualization of conflict in evolutionary data. We present a new method for constructi

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