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Data from: Genomic evidence of gene flow during reinforcement in Texas Phlox
负责人:
关键词:
phylogenetic network;Phlox roemeriana;Phlox;transcriptome;reinforcement;introgression;Phlox pilosa;Phlox cuspidata;Phlox drummondii
DOI:
doi:10.5061/dryad.r25s5
摘要:
to determine the phylogenetic relationships between these species, and find extensive discordance among gene tree topologies across genes. We find evidence
Data from: Phylogenomic interrogation of Arachnida reveals systemic conflicts in phylogenetic signal
负责人:
关键词:
Arachnids;Concatenation;topological conflict;Palaeozoic;Arachnopulmonata;Arthropoda;Transcriptomics;ancient rapid radiation;orthology prediction
DOI:
doi:10.5061/dryad.nb2f7
摘要:
of variable evolutionary rate, revealing significant conflicts in phylogenetic signal. Analyses of gene-tree discordance indicate marked incongruence
Data from: Examination of hemiplasy, homoplasy and phylogenetic discordance in chromosomal evolution of the Bovidae
负责人:
关键词:
hemiplasy;chromosomes;lineage sorting;Evolution;systematics;hybridization;Cenozoic;Bovidae;Homoplasy
DOI:
doi:10.5061/dryad.8332
摘要:
(resulting from secondary contact among taxa), processes that can potentially lead to phylogenetic discordance. We conclude that the most probable
Data from: Embracing discordance: phylogenomic analyses provide evidence for allopolyploidy leading to cryptic diversity in a Mediterranean Campanula
负责人:
关键词:
polyploidy;Campanula erinus;Campanulaceae;Campanula;hybridization;phylogenomics;cryptic diversity
DOI:
doi:10.5061/dryad.hn06n
摘要:
of species diversity and the importance of carefully considering gene-tree discordance within such datasets.
Data from: Interrogating genomic-scale data for Squamata (lizards, snakes, and amphisbaenians) shows no support for key traditional morphological relationships
负责人:
关键词:
neural network;lizards;genomics;phylogeny;Gene Interrogation;Snakes
DOI:
doi:10.5061/dryad.sm6jb0p
摘要:
properties, such as an insufficient number of parsimony informative sites), may account for most gene and species-tree discordance. We find overwhelming signal
Data from: Phylogenomic analyses reveal a deep history of hybridization and polyploidy in the Neotropical genus Lachemilla (Rosaceae)
负责人:
关键词:
gene flow;polyploidy;cytonuclear discordance;Rosaceae;Lachemilla;hybridization;species trees;introgression;phylogenetic networks
DOI:
doi:10.5061/dryad.vj2s888
摘要:
for phylogenetic reconstruction. Here, we use sequence capture data and multiple species tree and species network approaches to resolve the backbone phylogeny of the Ne
Data from: Species tree of a recent radiation: the subfamily Delphininae (Cetacea, Mammalia)
负责人:
关键词:
Species tree;incomplete lineage sorting;Delphinidae;rapid radiation;hybridization;speciation
DOI:
doi:10.5061/dryad.6dr0475t
摘要:
Delphininae are one such case. Non-monophyly, rapid speciation events, and discordance between morphological and molecular characters have made the inference
Data from: Phylogenomics of horned lizards (genus: Phrynosoma) using targeted sequence capture data
负责人:
关键词:
Species tree;Concatenation;ultraconserved elements;phylogeny;SVD quartets;Phrynosomatidae;systematics;coalescent;Phrynosoma
DOI:
doi:10.5061/dryad.82p92
摘要:
kely the result of rapid speciation at the start of Phrynosoma diversification, whereas other examples of gene tree discordance appear to be caused by active and r
Data from: Phylogeny with introgression in Habronattus jumping spiders (Araneae: Salticidae)
负责人:
关键词:
incomplete lineage sorting;Habronattus;Harmochirina;transcriptome;Plexippini;phylogeny;hybridization;introgression;introgression;incomplete lineage sorting;Salticidae;phylogeny;Salticinae;Jumping spiders
DOI:
doi:10.5061/dryad.5kg33
摘要:
and the coecatus group. To determine the relative contributions of ILS and introgression, we analyzed gene tree discordance for nuclear loci longer than 1 kb usi
Data from: SimPhy: phylogenomic simulation of gene, locus and species trees
负责人:
关键词:
Multilocus Coalescent;Species tree;gene family evolution;Multispecies coalescent;incomplete lineage sorting;Simulation;substitution rate;Gene duplication and loss;gene conversion;Locus tree;Horizontal gene transfer
DOI:
doi:10.5061/dryad.707td
摘要:
sorting, gene duplication and loss, horizontal gene transfer—all three potentially leading to species tree/gene tree discordance—and gene conversion. SimPhy implements

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