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Data from: Hybridization could be a common phenomenon within the highly diverse lizard genus Liolaemus
- 负责人：
- DOI：
- doi:10.5061/dryad.fm0g3m5
- 摘要：
- for approaching the hybridization hypothesis between these lizard species complexes. We explored the level of gene tree discordance using the novel “extra lineage
Data from: Exploring tree-like and non-tree-like patterns using genome sequences: an example using the inbreeding plant species Arabidopsis thaliana
- 负责人：
- DOI：
- doi:10.5061/dryad.q044d
- 摘要：
- alogical history. As expected from accessions of the same species, we found much discordance between nuclear gene trees. Nonetheless, we inferred the optimal
Data from: Phylogenomic analyses reveal extensive gene flow within the magic flowers (Achimenes)
- 负责人：
- DOI：
- doi:10.5061/dryad.9202s
- 摘要：
- s, we sequenced 12 transcriptomes. We used a variety of methods to infer the species tree, examine gene tree discordance, and infer patterns of gene flow. Key res
Data from: From cacti to carnivores: improved phylotranscriptomic sampling and hierarchical homology inference provide further insight int
- 负责人：
- 关键词：
- Caryophyllales;Phylotranscriptomic;homology;coalescent;Supermatrix;gene tree conflict;phylogenomics
- DOI：
- doi:10.5061/dryad.470pd
- 摘要：
- analyses. Key Results— Our phylogenetic analyses resolved many clades with strong support, but also showed significant gene-tree discordance
Data from: Concatenation and concordance in the reconstruction of mouse lemur phylogeny: an empirical demonstration of the effect of allele sampling
- 负责人：
- DOI：
- doi:10.5061/dryad.3mt58823
- 摘要：
- The systematics and speciation literature is rich with discussion relating to the potential for gene tree/species tree discordance. Numerous
Data from: Data concatenation, Bayesian concordance and coalescent-based analyses of the species tree for the rapid radiation of Triturus newts
- 负责人：
- 关键词：
- 454 sequencing;crested newt;Gene tree;transcriptome;multi-species coalescent;Triturus;marbled newt
- DOI：
- doi:10.5061/dryad.mm81p
- 摘要：
- discordance due to incomplete lineage sorting (possibly aggravated by hybridization) in combination with low information content of the markers employed
Data from: A Bayesian supertree model for genome-wide species tree reconstruction
- 负责人：
- DOI：
- doi:10.5061/dryad.74922
- 摘要：
- . At the same time, we need to make most use of all available data. Most species tree methods deal with single processes of phylogenetic discordance, nam
Data from: Phylogenetic marker development for target enrichment from transcriptome and genome skim data: the pipeline and its application
- 负责人：
- 关键词：
- Species tree;cytonuclear discordance;Target Enrichment;low-copy nuclear genes;Oxalis;genome skimming
- DOI：
- doi:10.5061/dryad.dn08t
- 摘要：
- ry robust, as retrieved through various gene and species tree reconstruction methods as well as concatenation. Cytonuclear discordance was strong. This indi
Data from: Methodological congruence in phylogenomic analyses with morphological support for teiid lizards (Sauria: Teiidae)
- 负责人：
- DOI：
- doi:10.5061/dryad.d4d5d
- 摘要：
- A well-known issue in phylogenetics is discordance among gene trees, species trees, morphology, and other data types. Gene-tree discordance is oft
Data from: Does gene tree discordance explain the mismatch between macroevolutionary models and empirical patterns of tree shape and branching times?
- 负责人：
- DOI：
- doi:10.5061/dryad.8f97r
- 摘要：
- an incongruity between models that predict species tree patterns and empirical analyses that consider gene trees. We investigate the extent to which the difference
