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Data from: Suitability of different mapping algorithms for genome-wide polymorphism scans with Pool-Seq data.
- 负责人：
- DOI：
- doi:10.5061/dryad.2g3s4
- 摘要：
- on of a consistent Pool-seq bioinformatics pipeline building on the recommendations of this study can substantially increase the reliability of Pool-Seq result
Data from: How “simple” methodological decisions affect interpretation of population structure based on reduced representation library DNA sequencing
- 负责人：
- DOI：
- doi:10.5061/dryad.4vr8kp3
- 摘要：
- coverage and sequencing depth (library quality), as well as choices of values for adjustable bioinformatics parameters. To empirically explore the importance
Data from: Phylotranscriptomic consolidation of the jawed vertebrate timetree
- 负责人：
- 关键词：
- DOI：
- doi:10.5061/dryad.r2n70
- 摘要：
- l bioinformatic pipeline to assemble large and accurate phylogenomic datasets from RNA sequencing and find this phylotranscriptomic approach successful and highly
Data from: Unlocking the vault: next generation museum population genomics
- 负责人：
- DOI：
- doi:10.5061/dryad.s296n
- 摘要：
- munks (Tamias alpinus) in the high Sierra Nevada area of California, USA. We developed robust bioinformatic pipelines that rigorously detect and filter-out base
Data from: Intra-individual polymorphism in chloroplasts from NGS data: where does it come from and how to handle it?
- 负责人：
- DOI：
- doi:10.5061/dryad.31733
- 摘要：
- bioinformatics pipelines’ error rates for SNP and genotypes calling using SNPs identified in Sanger sequencing. Specific pipelines are adequate to deal with
Data from: Likelihood-based inference of population history from low coverage de novo genome assemblies
- 负责人：
- DOI：
- doi:10.5061/dryad.r3r60
- 摘要：
- h to discriminate among recent, non-equilibrium histories. We address both the assembly and inference challenges. We develop a bioinformatic pipeline for generati
Data from: Evaluating hybridization capture with RAD probes as a tool for museum genomics with historical bird specimens
- 负责人：
- DOI：
- doi:10.5061/dryad.r7q86
- 摘要：
- es of input DNA affect sequencing, assembly, and population genetic inference. We present a modified bench protocol and bioinformatics pipeline, including thr
Data from: Adélie penguin population diet monitoring by analysis of food DNA in scats
- 负责人：
- DOI：
- doi:10.5061/dryad.1rf7d
- 摘要：
- , and in four different years. A novel molecular diet assay and bioinformatics pipeline based on nuclear small subunit ribosomal RNA gene (SSU rDNA) sequencing was use
Data from: A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: applicati
- 负责人：
- 关键词：
- second generation sequencing DNA barcoding mini-barcode mitochondrial marker trophic interactions food web
- DOI：
- doi:10.5061/dryad.6gd51
- 摘要：
- how the shorter COI fragment coupled with an efficient bioinformatics pipeline can be used to characterize species diversity from environmental samples
Data from: Genomic sequence capture of haemosporidian parasites: methods and prospects for enhanced study of host-parasite evolution
- 负责人：
- DOI：
- doi:10.5061/dryad.8030nq9
- 摘要：
- for sample preparation and sequence capture including custom probe sequences, and describe our bioinformatics pipeline using aTRAM 2.0, PHYLUCE, and custom Perl/Python
