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Data from: Single nucleotide polymorphism discovery via genotyping by sequencing to assess population genetic structure and r
- 负责人：
- DOI：
- doi:10.5061/dryad.05qs7
- 摘要：
- approaches like GBS and diverse bioinformatics pipelines used here facilitate evolutionary analyses of complex systems with multiple ploidy levels.
Data from: A phylogenomic approach based on PCR target enrichment and high throughput sequencing: resolving the diversity within the South Americ
- 负责人：
- DOI：
- doi:10.5061/dryad.fh592
- 摘要：
- esent a bioinformatics pipeline to process the raw HTS reads to either generate consensus sequences (with or without ambiguities) for every locus in eve
Data from: Testing pipelines for genome-wide SNP calling from Genotyping-By-Sequencing (GBS) data for Pinus ponderosa
- 负责人：
- DOI：
- doi:10.5061/dryad.6fv8fb4
- 摘要：
- d to align sequence fragments from related species, sequence divergence over evolutionary time might reduce efficiency. Here we compare four GBS bioinformatics
Data from: Utility of pooled sequencing for association mapping in non-model organisms
- 负责人：
- DOI：
- doi:10.5061/dryad.85q6j
- 摘要：
- for association mapping in model organisms, it has not been frequently utilized in natural populations. To extend bioinformatic tools for rapid implementation of Pool-Seq
Data from: HiMAP: robust phylogenomics from highly multiplexed amplicon sequencing
- 负责人：
- DOI：
- doi:10.5061/dryad.6524f
- 摘要：
- bioinformatic pipelines for locus selection based on genomic and transcriptomic data resources and post-sequencing consensus calling and alignment. This method
Data from: A non-lethal sampling method to obtain, generate and assemble whole-blood transcriptomes from small, wild mammals
- 负责人：
- DOI：
- doi:10.5061/dryad.p760b
- 摘要：
- g method, the laboratory protocols and a bioinformatic pipeline to sequence and assemble the whole blood transcriptome, using Illumina RNA-Seq, from wild greater mouse-eared
Data from: Parallel tagged amplicon sequencing of transcriptome-based genetic markers for Triturus newts with the Ion Torrent
- 负责人：
- DOI：
- doi:10.5061/dryad.36775
- 摘要：
- and sequenced on the Ion Torrent next-generation sequencing platform. A bioinformatics pipeline identifies the alleles and recodes these to a genotypic format. Ne
Data from: Fluidigm2PURC: automated processing and haplotype inference for double-barcoded PCR amplicons
- 负责人：
- DOI：
- doi:10.5061/dryad.89k5k30
- 摘要：
- double?barcoded PCR amplicons. In combination with the program PURC (Pipeline for Untangling Reticulate Complexes), our scripts process raw FASTQ files
Data from: Rapid allopolyploid radiation of moonwort ferns (Botrychium ; Ophioglossaceae) revealed by PacBio sequencing of homologous and homeologous
- 负责人：
- 关键词：
- Ferns;PURC;reticulate evolution;polyploid network;Botrychium;Ophioglossaceae;low-copy makers;PacBio
- DOI：
- doi:10.5061/dryad.6q8d6
- 摘要：
- frequent speciation events. Here, we use PacBio sequencing and the PURC bioinformatics pipeline to capture all homeologous or allelic copies of four lon
Data from: TERAD: Extraction of transposable element composition from RADseq data
- 负责人：
- DOI：
- doi:10.5061/dryad.2375033
- 摘要：
- whole genome sequencing are comparable within and across species. Finally, we develop a new bioinformatic pipeline, TERAD, to extract TE compositions from RADseq data
