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Data from: Marker development for phylogenomics: the case of Orobanchaceae, a plant family with contrasting nutritional modes
- 负责人:
- DOI:
- doi:10.5061/dryad.7b86c
- 摘要:
- pipelines. Here, we established a highly flexible bioinformatic pipeline, BaitsFinder, to identify putative orthologous single copy genes (SCGs
Data from: Bioinformatic processing of RAD-seq data dramatically impacts downstream population genetic inference
- 负责人:
- DOI:
- doi:10.5061/dryad.q14c1
- 摘要:
- and unbiased interpretation. To test for the impact of bioinformatic data processing on downstream population genetic inferences, we analysed mammalian RAD-seq
Data from: The QRS (Quantification of Representative Sequences) pipeline for amplicon sequencing: case study on within-population ITS1
- 负责人:
- DOI:
- doi:10.5061/dryad.v7f7r
- 摘要:
- w bioinformatic pipeline (QRS) that pools similar sequence variants and estimates their frequencies in NGS data sets from populations or communities. We tested
Data from: Development of genomic resources for the tick Ixodes ricinus: isolation and characterization of single nucleotide polymorphisms
- 负责人:
- DOI:
- doi:10.5061/dryad.1h1f2
- 摘要:
- tool READ2SNPS, which identifies SNPs without requiring a reference genome. Stringent selection criteria were applied in a bioinformatics pipeline
Data from: AftrRAD: a pipeline for accurate and efficient de novo assembly of RADseq data
- 负责人:
- DOI:
- doi:10.5061/dryad.sn034
- 摘要:
- of novel bioinformatic tools that aid in the generation and analysis of these data. Here, we report the availability of AftrRAD, a bioinformatic pipeline
Data from: Development of highly reliable in silico SNP resource and genotyping assay from exome capture and sequencing: an example from black spruce
- 负责人:
- DOI:
- doi:10.5061/dryad.tr87v
- 摘要:
- capture in the genus Picea. A bioinformatics pipeline was developed including stringent criteria that helped detect a set of 97 075 highly reli
Data from: Allele discovery of ten candidate drought-response genes in Austrian oak using a systematically informatics approach based on 454
- 负责人:
- DOI:
- doi:10.5061/dryad.83gf113b
- 摘要:
- 454 sequencing and developed a bioinformatic pipeline to process multiplexed tagged amplicons in order to identify single nucleotide polymorphisms and allelic
Data from: SSR_pipeline: a bioinformatic infrastructure for identifying microsatellites from paired-end Illumina high-throughput DNA sequencing data
- 负责人:
- DOI:
- doi:10.5061/dryad.n65k2
- 摘要:
- SSR_pipeline is a flexible set of programs designed to efficiently identify simple sequence repeats (e.g., microsatellites) from paired-end high
Data from: Parallel tagged amplicon sequencing reveals major lineages and phylogenetic structure in the North American tiger salama
- 负责人:
- DOI:
- doi:10.5061/dryad.03s86
- 摘要:
- grinum) species complex. To manage the bioinformatic processing of this large data set (344,330 reads), we developed a pipeline that sorts PTS data by barcode and locus
Data from: Automated integration of trees and traits: a case study using paired fin loss across teleost fishes
- 负责人:
- DOI:
- doi:10.5061/dryad.v0s27
- 摘要:
- ctoral fin reduction and loss are thought to have occurred independently multiple times in the evolution of fishes. We developed a bioinformatics pipeline to identi