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Data from: Marker development for phylogenomics: the case of Orobanchaceae, a plant family with contrasting nutritional modes
负责人:
关键词:
bioinformatic pipeline;Target Enrichment;Solanum lycopersicum;Erythranthe guttata;Orobanchaceae;marker development;single copy nuclear genes;phylogenomics
DOI:
doi:10.5061/dryad.7b86c
摘要:
pipelines. Here, we established a highly flexible bioinformatic pipeline, BaitsFinder, to identify putative orthologous single copy genes (SCGs
Data from: Bioinformatic processing of RAD-seq data dramatically impacts downstream population genetic inference
负责人:
关键词:
genomics;reference genome;ddRAD;bioinformatics;Galápagos sea lion (Zalophus wollebaeki)
DOI:
doi:10.5061/dryad.q14c1
摘要:
and unbiased interpretation. To test for the impact of bioinformatic data processing on downstream population genetic inferences, we analysed mammalian RAD-seq
Data from: The QRS (Quantification of Representative Sequences) pipeline for amplicon sequencing: case study on within-population ITS1
负责人:
关键词:
cloning\/sanger sequencing;ITS1 region;Caullerya mesnili;Amplicon Sequencing
DOI:
doi:10.5061/dryad.v7f7r
摘要:
w bioinformatic pipeline (QRS) that pools similar sequence variants and estimates their frequencies in NGS data sets from populations or communities. We tested
Data from: Development of genomic resources for the tick Ixodes ricinus: isolation and characterization of single nucleotide polymorphisms
负责人:
关键词:
Genomics\/Proteomics;Parasitology;Bioinfomatics\/Phyloinfomatics;Ixodes ricinus;Invertebrates;Population Genetics - Empirical
DOI:
doi:10.5061/dryad.1h1f2
摘要:
tool READ2SNPS, which identifies SNPs without requiring a reference genome. Stringent selection criteria were applied in a bioinformatics pipeline
Data from: AftrRAD: a pipeline for accurate and efficient de novo assembly of RADseq data
负责人:
关键词:
conservation genetics;Genomics\/Proteomics;phylogeography;Bioinfomatics\/Phyloinfomatics
DOI:
doi:10.5061/dryad.sn034
摘要:
of novel bioinformatic tools that aid in the generation and analysis of these data. Here, we report the availability of AftrRAD, a bioinformatic pipeline
Data from: Development of highly reliable in silico SNP resource and genotyping assay from exome capture and sequencing: an example from black spruce
负责人:
关键词:
Environmental DNA;Species Interactions;Bioinfomatics\/Phyloinfomatics;Gymnosperms
DOI:
doi:10.5061/dryad.tr87v
摘要:
capture in the genus Picea. A bioinformatics pipeline was developed including stringent criteria that helped detect a set of 97 075 highly reli
Data from: Allele discovery of ten candidate drought-response genes in Austrian oak using a systematically informatics approach based on 454
负责人:
关键词:
454;Quercus robur;Next Generation Sequencing;Quercus petraea;barcode
DOI:
doi:10.5061/dryad.83gf113b
摘要:
454 sequencing and developed a bioinformatic pipeline to process multiplexed tagged amplicons in order to identify single nucleotide polymorphisms and allelic
Data from: SSR_pipeline: a bioinformatic infrastructure for identifying microsatellites from paired-end Illumina high-throughput DNA sequencing data
负责人:
关键词:
microsatellite discovery;Next Generation Sequencing;Ephydra packardi;Python
DOI:
doi:10.5061/dryad.n65k2
摘要:
SSR_pipeline is a flexible set of programs designed to efficiently identify simple sequence repeats (e.g., microsatellites) from paired-end high
Data from: Parallel tagged amplicon sequencing reveals major lineages and phylogenetic structure in the North American tiger salama
负责人:
关键词:
conservation genetics;phylogeography;Ambystoma;Bioinfomatics\/Phyloinfomatics;Amphibians;speciation;Population Genetics - Empirical
DOI:
doi:10.5061/dryad.03s86
摘要:
grinum) species complex. To manage the bioinformatic processing of this large data set (344,330 reads), we developed a pipeline that sorts PTS data by barcode and locus
Data from: Automated integration of trees and traits: a case study using paired fin loss across teleost fishes
负责人:
关键词:
Phenotype;bioinformatics pipeline;Inference;paired fins;ancestral state reconstruction;evolutionary morphology;Teleostei;Fishes;ontology;missing data
DOI:
doi:10.5061/dryad.v0s27
摘要:
ctoral fin reduction and loss are thought to have occurred independently multiple times in the evolution of fishes. We developed a bioinformatics pipeline to identi

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