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Data from: Phylogenomic incongruence, hypothesis testing, and taxonomic sampling: the monophyly of characiform fishes
负责人:
关键词:
Concatenation;Exons;Otophysi;Multispecies coalescent methods;UCEs;Gene genealogy interrogation
DOI:
doi:10.5061/dryad.vb76b45
摘要:
) and data curation to new and published datasets with more than 1000 exons, 500 ultraconserved element (UCE) loci, and transcriptomic sequences that support
Data from: Next-generation museum genomics: phylogenetic relationships among palpimanoid spiders using sequence capture techniques (Araneae
负责人:
关键词:
Mecysmaucheniidae;Araneomorphae;Huttoniidae;Stenochilidae;Palpimanidae;Archaeidae;ultra conserved elements;exon;ethanol
DOI:
doi:10.5061/dryad.387c58v
摘要:
nt target capture sequencing techniques to sequence both Ultra-Conserved Elements (UCE) and exonic regions for lineages that span the modern spiders
Data from: Enriching the ant tree of life: enhanced UCE bait set for genome-scale phylogenetics of ants and other Hymenoptera
负责人:
关键词:
Wasmannia auropunctata;Formica podzolica;Harpegnathos saltator;Myrcidris epicharis;Acromyrmex echinatior;Aneuretus simoni;Crematogaster nigropilosa;Bombus impatiens;Cephalotes atratus;Prionopelta amabilis;molecular systematics;Aculeata;Gnamptogenys minuta;Dolichoderus lamellosus;Pepsis grossa;Tetheamyrma sp;Patagonomyrmex angustus;Fulakora orizabana;Hypoponera nitidula;Diacamma rugosum;Eurhopalothrix gravis;Adelomyrmex marginodus;Vollenhovia emeryi;Protanilla sp;Neogene;Adelomyrmex dentivagans;Acanthognathus ocellatus;Gnamptogenys simulans;Ponera coarctata;Hylomyrma dentiloba;Solenopsis invicta;Camponotus floridanus;Linepithema humile;Pogonomyrmex occidentalis;Neoponera unidentata;Stegomyrmex manni;Stenamma alas;Next-generation sequencing;ultraconserved elements;Odontomachus meinerti;Acanthoponera minor;Tatuidris tatusia;targeted enrichment;Adelomyrmex longinoi;Mayaponera constricta;Nothomyrmecia macrops;Pheidole fimbriata;Cataulacus egenus;Pogonomyrmex barbatus;Temnothorax nevadensis;Paleogene;Pseudoponera stigma;Cyphomyrmex rimosus;Tapinoma sessile;Leptomyrmex erythrocephalus;Tetraponera aethiops;Megachile rotundata;Aphaenogaster phalangium;Apis mellifera;Lasius sitiens;Basiceros manni;Myrmecia fulvipes;Formicidae;Apomyrma sp;Pachycondyla harpax;Sceliphron caementarium;Ooceraea biroi;Solenopsis bicolor;Perissomyrmex snyderi;Brachycistis timberlakei;Eciton burchellii;Rogeria belti;Lasioglossum albipes;Leptothorax muscorum;Dinoponera longipes;Myrmica incompleta;Hymenoptera;Manica hunteri;Proceratium mancum;Lasius niger;Rhopalothrix isthmica;Platythyrea punctata;Tetraponera allaborans;Philidris sp;Mischocyttarus flavitarsis;Simopelta andersoni;Gauromyrmex bengakalisi;Veromessor lobognathus;Nesomyrmex pleuriticus;Octostruma amrishi;Myrmecia varians;Goniomma blanci;phylogenomics;Myrmelachista joycei;Parvaponera darwinii;Atta cephalotes;Aphaenogaster occidentalis;Tetraponera nodosa;Discothyrea horni complex;Monomorium pharaonis;Paraponera clavata;Pristomyrmex bicolor;Evolution;Cretaceous;Cryptopone butteli;Ectatomma gibbum;Pseudomyrmex spinicola;Cardiocondyla obscurior;Syscia augustae;Myrmicocrypta sp;Pseudomyrmex gracilis;Apterostigma dentigerum
DOI:
doi:10.5061/dryad.89n87
摘要:
evolutionary history in many organismal groups. Because the UCE approach is still relatively new, much remains to be learned about how best to identify UCE loci
Data from: Target enrichment of ultraconserved elements from arthropods provides a genomic perspective on relationships among Hymenoptera
负责人:
关键词:
ultraconserved elements UCEs target enrichment baits probes arthropods conserved sequence
DOI:
doi:10.5061/dryad.46195
摘要:
) for enriching these loci that researchers can use with DNA templates extracted from a variety of sources. We used our UCE bait set to enrich an average of 721 UCE
Data from: Target capture and massively parallel sequencing of ultraconserved elements for comparative studies at shallow evolutionary time scales
负责人:
关键词:
Next-generation sequencing;Coalescent Theory;isolation-with-migration;SNPs;Birds;massively parallel sequencing;Avian
DOI:
doi:10.5061/dryad.qm4j1
摘要:
capture and massively parallel sequencing to generate UCE data for five co-distributed Neotropical rainforest bird species, we recovered 776–1516 UCE loci across the five species. Ac
Data from: Target capture and massively parallel sequencing of ultraconserved elements for comparative studies at shallow evolutionary time scales
负责人:
关键词:
Next-generation sequencing;Coalescent Theory;isolation-with-migration;SNPs;Birds;massively parallel sequencing;Avian
DOI:
doi:10.5061/dryad.qm4j1.1
摘要:
capture and massively parallel sequencing to generate UCE data for five co-distributed Neotropical rainforest bird species, we recovered 776–1516 UCE loci across the five species. Ac
Data from: Sequence capture phylogenomics of eyeless Cicurina spiders from Texas caves, with emphasis on US federally-endangered species from Bexar
负责人:
关键词:
Cicurina;conservation;ultra-conserved element;taxonomy;karst;Araneae;cave evolution;Hahniidae
DOI:
doi:10.5061/dryad.28fg251
摘要:
species listed as US Federally Endangered. Our sequence capture experiments resulted in the recovery of ~ 200-400 homologous ultra-conserved element (UCE
Data from: High phylogenetic utility of an ultraconserved element probe set designed for Arachnida
负责人:
Derkarabetian, Shahan
关键词:
phylogenomics population genomics target enrichment ultraconserved elements arthropods
DOI:
doi:10.5061/dryad.5k3j3
摘要:
s of available arachnid genomes to enrich a sample of loci from 32 diverse arachnids. Sequence capture returned an average of 487 UCE loci for all species
Data from: Impacts of inference method and dataset filtering on phylogenomic resolution in a rapid radiation of ground squirrels (Xerinae: Marmotini)
负责人:
关键词:
Marmotini;incomplete lineage sorting;Concatenation;gene tree estimation error;coalescent;UCEs;Miocene - Holocene
DOI:
doi:10.5061/dryad.t358vv1
摘要:
to the model and method of inference, as well as the information content of loci employed. We used a dataset of >3,950 ultraconserved element (UCE) loci from a classic
from genome sequences
负责人:
关键词:
Ultra-conserved elements;molecular clock;polar;single nucleotide polymorphism SNP Subject area: Molecular systematics and phylogenetics;single nucleotide polymorphism SNP;Ursus;Molecular systematics and phylogenetics;phylogeny;brown;genomics and gene mapping;black Bears
DOI:
doi:10.5061/dryad.1qp80
摘要:
s with black bears. Concatenation and coalescence-based analysis of consensus sequences of approximately one million base pairs of ultra-conserved elements (UCE

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