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Data from: The complete sequence of the mitochondrial genome of Butomus umbellatus - a member of an early branching lineage of monocotyledons
- 负责人:
- DOI:
- doi:10.5061/dryad.42gc4
- 摘要:
- of Butomus umbellatus (Butomaceae) based on next-generation sequencing data. The genome was assembled into a circular molecule, 450,826 bp in length. Coding sequences
Data from: Small RNAs from a big genome: the piRNA pathway and transposable elements in the salamander species Desmognathus fuscus
- 负责人:
- Mueller, Rachel L.
- 关键词:
- genome size evolution small RNA evolution transposable element silencing piRNA pathway salamanders vertebrates
- DOI:
- doi:10.5061/dryad.kv57r
- 摘要:
- of small RNA molecules that bear the characteristics of TE-targeting piRNAs. We also analyzed the amino acid sequences of piRNA pathway proteins from salamanders
Data from: Unmapped sequencing reads identify additional candidate genes linked to magnetoreception in rainbow trout
- 负责人:
- DOI:
- doi:10.5061/dryad.4g048
- 摘要:
- ng the available sequencing data from the trout brain transcriptomes, we assembled >27 million unmapped sequences (5.8% of total sequences) into 45,142 contigs
Data from: Nearly complete rRNA genes from 371 Animalia: updated structure-based alignment and phylogenetic analysis
- 负责人:
- Mallatt, Jon M.
- DOI:
- doi:10.5061/dryad.1v62kr3q
- 摘要:
- rRNA molecules, and is annotated in detail, including labeling of the erroneous sequences (contaminants). The alignment can be used for future studies
Data from: PROTAX-fungi: a web-based tool for probabilistic taxonomic placement of fungal ITS sequences
- 负责人:
- DOI:
- doi:10.5061/dryad.9dr6j0c
- 摘要:
- ? Incompleteness of reference sequence databases and unresolved taxonomic relationships complicates taxonomic placement of fungal sequences
Data from: Metazoan mitochondrial gene sequence reference datasets for taxonomic assignment of environmental samples
- 负责人:
- DOI:
- doi:10.5061/dryad.2v00t
- 摘要:
- -rich gene. However, sequences of the mitochondrial large ribosomal subunit RNA and Cytochrome b apoenzyme genes were observed for a large number of species in som
Data from: Ion Torrent PGM as tool for fungal community analysis: a case study of endophytes in Eucalyptus grandis reveals high taxonomic diversity
- 负责人:
- DOI:
- doi:10.5061/dryad.51rf8
- 摘要:
- sequence similarity cutoffs for clustering and filtering of databases for removal of sequences with insufficient taxonomy. Sequence similarity cutoff values only ha
Data from: Seabird and Louse Coevolution: Complex Histories Revealed by 12S rRNA Sequences and Reconciliation Analyses
- 负责人:
- DOI:
- doi:10.5061/dryad.593
- 摘要:
- due to chance. The sequence data were used to test for rate heterogeneity for both seabirds and lice. The seabird tree showed no signific
Data from: The power and promise of RNA-seq in ecology and evolution
- 负责人:
- 关键词:
- biological replication differential expression experimental design power analysis RNA sequencing Transcriptomics
- DOI:
- doi:10.5061/dryad.vp42s
- 摘要:
- , yet RNA-seq studies still underutilise biological replication. Finite research budgets force a trade-off between sequencing effort and replication in RNA-se
Data from: On the optimal trimming of high-throughput mRNA sequence data
- 负责人:
- DOI:
- doi:10.5061/dryad.7rm34
- 摘要:
- , researchers interested in functional biology and adaptation have used these technologies to sequence mRNA transcriptomes of specific tissues, which in turn ar