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Data from: The complete sequence of the mitochondrial genome of Butomus umbellatus - a member of an early branching lineage of monocotyledons
负责人:
关键词:
monocots;plant mitochondria;Genome sequencing;Butomus umbellatus
DOI:
doi:10.5061/dryad.42gc4
摘要:
of Butomus umbellatus (Butomaceae) based on next-generation sequencing data. The genome was assembled into a circular molecule, 450,826 bp in length. Coding sequences
Data from: Small RNAs from a big genome: the piRNA pathway and transposable elements in the salamander species Desmognathus fuscus
负责人:
Mueller, Rachel L.
关键词:
genome size evolution small RNA evolution transposable element silencing piRNA pathway salamanders vertebrates
DOI:
doi:10.5061/dryad.kv57r
摘要:
of small RNA molecules that bear the characteristics of TE-targeting piRNAs. We also analyzed the amino acid sequences of piRNA pathway proteins from salamanders
Data from: Unmapped sequencing reads identify additional candidate genes linked to magnetoreception in rainbow trout
负责人:
关键词:
RNA-seq;Transcriptomics;Oncorhynchus mykiss;gene expression
DOI:
doi:10.5061/dryad.4g048
摘要:
ng the available sequencing data from the trout brain transcriptomes, we assembled >27 million unmapped sequences (5.8% of total sequences) into 45,142 contigs
Data from: Nearly complete rRNA genes from 371 Animalia: updated structure-based alignment and phylogenetic analysis
负责人:
Mallatt, Jon M.
关键词:
28S rRNA 18S rRNA Ribosomal rRNA genes alignment secondary structure PHASE program
DOI:
doi:10.5061/dryad.1v62kr3q
摘要:
rRNA molecules, and is annotated in detail, including labeling of the erroneous sequences (contaminants). The alignment can be used for future studies
Data from: PROTAX-fungi: a web-based tool for probabilistic taxonomic placement of fungal ITS sequences
负责人:
关键词:
altitudinal gradient;root-associated fungi;mycorrhizal fungi;Arctic
DOI:
doi:10.5061/dryad.9dr6j0c
摘要:
? Incompleteness of reference sequence databases and unresolved taxonomic relationships complicates taxonomic placement of fungal sequences
Data from: Metazoan mitochondrial gene sequence reference datasets for taxonomic assignment of environmental samples
负责人:
关键词:
Metazoan;Midori reference
DOI:
doi:10.5061/dryad.2v00t
摘要:
-rich gene. However, sequences of the mitochondrial large ribosomal subunit RNA and Cytochrome b apoenzyme genes were observed for a large number of species in som
Data from: Ion Torrent PGM as tool for fungal community analysis: a case study of endophytes in Eucalyptus grandis reveals high taxonomic diversity
负责人:
关键词:
Fungi;Eucalyptus grandis;metagenomics;internal transcribed spacer (ITS);Endophytes
DOI:
doi:10.5061/dryad.51rf8
摘要:
sequence similarity cutoffs for clustering and filtering of databases for removal of sequences with insufficient taxonomy. Sequence similarity cutoff values only ha
Data from: Seabird and Louse Coevolution: Complex Histories Revealed by 12S rRNA Sequences and Reconciliation Analyses
负责人:
关键词:
BPA;reconciliation analysis;seabirds;host-switching;cospeciation;sorting events;Lice;relative rate test
DOI:
doi:10.5061/dryad.593
摘要:
due to chance. The sequence data were used to test for rate heterogeneity for both seabirds and lice. The seabird tree showed no signific
Data from: The power and promise of RNA-seq in ecology and evolution
负责人:
关键词:
biological replication differential expression experimental design power analysis RNA sequencing Transcriptomics
DOI:
doi:10.5061/dryad.vp42s
摘要:
, yet RNA-seq studies still underutilise biological replication. Finite research budgets force a trade-off between sequencing effort and replication in RNA-se
Data from: On the optimal trimming of high-throughput mRNA sequence data
负责人:
关键词:
Trinity;genomics;RNAseq
DOI:
doi:10.5061/dryad.7rm34
摘要:
, researchers interested in functional biology and adaptation have used these technologies to sequence mRNA transcriptomes of specific tissues, which in turn ar

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