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Data from: Current methods for automated filtering of multiple sequence alignments frequently worsen single-gene phylogenetic inference
负责人:
关键词:
phylogenetic inference;alignment trimming;multiple sequence alignment;alignment filtering;molecular phylogeny;phylogenetics;phylogeny
DOI:
doi:10.5061/dryad.pc5j0
摘要:
Phylogenetic inference is generally performed on the basis of multiple sequence alignments (MSA). Because errors in an alignment can lead to errors
Data from: Phylogenetic tree estimation with and without alignment: new distance methods and benchmarking
负责人:
关键词:
Pair hidden Markov models;phylogenetic inference;Alignment free;Distance-based phylogenetics;statistical alignment
DOI:
doi:10.5061/dryad.n5r49
摘要:
on the two-step process of multiple sequence alignment followed by tree inference, despite persistent evidence that the alignment step can lead to biased results. Her
Data from: SATé-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees
负责人:
关键词:
SATé;maximum likelihood;phylogenetics;alignment
DOI:
doi:10.5061/dryad.n9r3h
摘要:
, can analyze larger datasets, and runs more efficiently than SATé-I. SATé-II is a meta-method that takes an existing multiple sequence alignment method
Data from: Proxies in practice: calibration and validation of multiple indices of animal abundance
负责人:
Falcy, Matthew
关键词:
Calibration Chinook salmon Convenience sample cross validation indices monitoring proxies weighted regression
DOI:
doi:10.5061/dryad.nk513
摘要:
. We tested our calibration methods using leave-one-out cross validation and simulation. Our cross-validation analysis did not definitively identify a single
Data from: A simulation-based approach to statistical alignment
负责人:
关键词:
statistical alignment;pairwise alignment;long-indel model;SimBa-SAl;sequence simulations
DOI:
doi:10.5061/dryad.p069231
摘要:
alignment algorithms, when analyzing simulated as well as empirical datasets. Finally, we study the goodness-of-fit of the long-indel and TKF91 models. We show tha
Data from: Tips and nodes are complimentary not competing approaches to the calibration of molecular clocks
负责人:
关键词:
Node;molecular clock;tip;Hymenoptera;calibration
DOI:
doi:10.5061/dryad.2q3k2
摘要:
on calibration, traditionally based on fossil constraints on clade (node) ages. Tip calibration has been developed to obviate undesirable aspects of node
Data from: Control of signaling alignment during the dynamic courtship display of a jumping spider
负责人:
Echeverri, Sebastian
关键词:
communication efficacy signaling behavior visual ecology spider vision
DOI:
doi:10.5061/dryad.s618v
摘要:
During communication, alignment between signals and sensors can be critical. Signals are often best perceived from specific angles
Data from: Individual recognition through olfactory - auditory matching in lemurs
负责人:
关键词:
Individual identity;Multimodal;individual recognition;Sex Differences;Lemur catta;Cross-modal;Ring-tailed lemur
DOI:
doi:10.5061/dryad.842nm
摘要:
y modalities become linked. Many vertebrate species use auditory–visual matching to recognize familiar conspecifics and heterospecifics, but we current
Data from: Incorporating thresholds into understanding salinity tolerance: a study using salt-tolerant plants in salt marshes
负责人:
关键词:
Salicornia europaea;biomass;salinity tolerance;survival;Suaeda salsa
DOI:
doi:10.5061/dryad.d856m
摘要:
eviously examined, 2) plant survival, above- and below-ground biomass have remarkably different responses to salinity, and 3) there is a non-linear, threshold
Data from: Fully automated sequence alignment methods are comparable to, and much faster than, traditional methods in large data sets: an examp
负责人:
关键词:
DOI:
doi:10.5061/dryad.nc220
摘要:
Aligning sequences for phylogenetic analysis (multiple sequence alignment; MSA) is an important, but increasingly computationally expensive step

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