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Data from: PSMC (pairwise sequentially Markovian coalescent) analysis of RAD (restriction site associated DNA) sequencing data
负责人:
关键词:
Pairwise Sequential Markovian Coalescent (PSMC);whole genome sequencing;threespine stickleback;demographic history;RAD sequencing
DOI:
doi:10.5061/dryad.0618v
摘要:
to reference genome-aligned restriction site associated DNA (RAD) data. We find that RAD data can potentially be used for PSMC analysis, but at present
Data from: TERAD: Extraction of transposable element composition from RADseq data
负责人:
关键词:
Synalpheus;bioinformatics;mobile genetic element;genome size;ddRADseq
DOI:
doi:10.5061/dryad.2375033
摘要:
e, we utilize restriction site associated DNA sequencing (RADSeq) as an alternative method to survey TE composition. First, we demonstrate in silico that double
Data from: Sequence capture versus restriction site associated DNA sequencing for shallow systematics
负责人:
关键词:
allele frequency spectrum;Coalescent methods;Next-generation sequencing;ultraconserved elements;Xenops minutus;Birds;concordance analysis;massively parallel sequencing
DOI:
doi:10.5061/dryad.604b8
摘要:
Sequence capture and restriction site associated DNA sequencing (RAD-Seq) are two genomic enrichment strategies for applying
Data from: Genome sequence of dwarf birch (Betula nana) and cross-species RAD markers
负责人:
关键词:
conservation genetics;Genomics\/Proteomics;Betula nana;Betula pubescens;hybridization;present;Ecological Genetics
DOI:
doi:10.5061/dryad.v5gd2
摘要:
New sequencing technologies allow development of genome-wide markers for any genus of ecological interest, including plant genera such as Betula
Data from: Less is more: extreme genome complexity reduction with ddRAD using Ion Torrent semiconductor technology
负责人:
关键词:
Eurasian perch SNP development and validation de novo assembly next-generation sequencing population genomics DNA pooling
DOI:
doi:10.5061/dryad.s2405
摘要:
(RAD) sequencing approach for Ion Torrent PGM platform. Our protocol results in extreme genome complexity reduction using two rare-cutting
Data from: Genome sequencing of a single tardigrade Hypsibius dujardini individual
负责人:
Arakawa, Kazuharu
关键词:
tardigrade genome RNA-seq
DOI:
doi:10.5061/dryad.t4k7h
摘要:
genomic information, we have developed an ultra-low input library sequencing protocol to enable the genome sequencing of a single tardigrade Hypsibius dujardini
Data from: Genotyping-in-Thousands by sequencing (GT-seq) panel development and application to minimally-invasive DNA samples to support studies
负责人:
关键词:
conservation genetics;Reptiles;Non-invasive sampling;Crotalus oreganus;targeted amplicon sequencing;SNP panel;molecular ecology;RAD-seq;Wildlife Management
DOI:
doi:10.5061/dryad.vr300p0
摘要:
ated DNA sequencing (RADseq) assembly. Comparisons of genotypes generated within and among RADseq and GT-seq for the same individuals found low ra
Data from: A framework phylogeny of the American oak clade based on sequenced RAD data
负责人:
关键词:
Expressed sequence tags (EST);Quercus;Next-generation sequencing;plant systematics;Fagaceae;restriction-site associated DNA;partitioned RAD;phylogenomics
DOI:
doi:10.5061/dryad.ts2hj
摘要:
e, we utilize next-generation sequencing of restriction-site associated DNA (RAD-Seq) to resolve a framework phylogeny of a predominantly American clade of oaks

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