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Data from: Coalescent versus concatenation methods and the placement of Amborella as sister to water lilies
负责人:
关键词:
Nymphaeales;long-branch attraction;Amborella trichopoda;Coalescent methods;concatenation methods;elevated substitution rates
DOI:
doi:10.5061/dryad.qb251
摘要:
e topologically identical except with respect to the degree of deep coalescence and branch lengths. Our results collectively suggest that the Amborella alon
Data from: Phylogenomics of Lophotrochozoa with consideration of systematic error
负责人:
关键词:
Rhyssoplax olivaceus;Lineus lacteus;Novocrania anomala;Boccardia proboscidea;Clymenella torquata;Glottidia pyramidata;Phascolosoma agassizii;saturation;Patella vulgata;Adineta vaga;Leptochiton asellus;Megadasys sp.;Spathoderma clenchi;Schistosoma mansoni;Platyzoa;Brachionus plicatilis;Loxosoma pectinaricola;Paranemertes peregrina;Phenacolepas pulchella;Taenia pisiformis;Ruditapes philippinarum;Sepioteuthis lessoniana;Macellomenia schanderi;Capitella teleta;Phoronis vancouverensis;Pomatoceros lamarckii;Alexandromenia crassa;Prochaetoderma californicum;Entalina tetragona;Symbion americanus;Spiralia;Neomenia carinata;Dosidicus gigas;Alitta virens;Tubulanus polymorphus-Halanych;Nemertea;Cephalothrix linearis;Mollusca;drosophila melanogaster;Laqueus californicus;Crassostrea gigas;Laevipilina hyalina;Macrodasys sp.;Phoronida;Aplysia californica;Mytilus edulis;Hemithiris psittacea;Bryozoa;Pectinaria gouldii;Octopus vulgaris;Brachiopoda;Compositional heterogeneity;Lineus longissimus;Gnathostomula paradoxa;Leptochiton rugatus;Graptacme eborea;Cephalothrix hongkongensis;Lottia gigantea;Nuculana pernula;Helobdella robusta;Priapulus caudatus;Daphnia pulex;Barentsia gracilis;Trochozoa;Malacobdella grossa;Enucula tenuis;Loxosomella cf. vivipara;Crepidula fornicata;Haliotis rufescens;Polyzoa;Nucella lapillus;Pedicellina cernua;Sagitta sp.;Tubulanus polymorphus-Struck;Annelida;Gadila tolmiei;Cerebratulus marginatus;Entoprocta;Villosa lienosa;Bugula neritina;Glycera dibranchiata;Lineus ruber;Sepia esculenta;Solemya velum;Long branch attraction;Schmidtea mediterranea;Pinctada fucata;Phoronis psammophila
DOI:
doi:10.5061/dryad.30k4v
摘要:
strict screening for paralogy using a tree-based approach. In order to reduce possible sources of systematic error, we calculated branch-length
Data from: Testing hypotheses of chaetognath origins: long branches revealed by 18S ribosomal DNA
负责人:
关键词:
Chaetognatha;winning-sites test;18s rDNA;phylogeny;long branches;Nematoda
DOI:
doi:10.5061/dryad.723
摘要:
and winning-sites analyses were employed to discriminate among competing hypotheses. The possibility of long-branch attraction accounting for the ch
Data from: Who let the CAT out of the bag? accurately dealing with substitutional heterogeneity in phylogenomic analyses
负责人:
关键词:
site-heterogeneity;Simulation;data partitioning;substitution models;phylogenomics
DOI:
doi:10.5061/dryad.85b2m
摘要:
of other models because they purportedly suppress long-branch attraction (LBA). These models are two of the most commonly used models in phylogenomics
Data from: Deep mitochondrial origin outside the sampled alphaproteobacteria
负责人:
关键词:
Alphaproteobacteria;metagenomics;Mitochondria;Binning;Evolution;phylogenomics
DOI:
doi:10.5061/dryad.068d0d0
摘要:
l Alphaproteobacteria. Subsequent phylogenomic analyses that specifically address long branch attraction and compositional bias artefacts suggest that mitochondria di
Data from: Graph splitting: a graph-based approach for superfamily-scale phylogenetic tree reconstruction
负责人:
关键词:
early evolution;TIM-barrel superfamily;Network analysis;Phylogenetic method;bioinformatics
DOI:
doi:10.5061/dryad.ps0qf4r
摘要:
tes, and long-branch attraction when sequences are substantially diverged. Its application to an empirical dataset of the triosephosphate isomerase (TIM)-barrel superfamily
Data from: The Strepsiptera Problem: Phylogeny of the Holometabolous Insect Orders Inferred from 18S and 28S Ribosomal DNA Sequences and Morphology
负责人:
关键词:
insect orders;Sensitivity Analysis;Strepsiptera;phylogeny;alignment;taxon sampling;molecular systematics
DOI:
doi:10.5061/dryad.772
摘要:
. We reject the notion that the monophyly of Halteria is due to long branch attraction because Strepsiptera and Diptera do not have the longest branches
Data from: Nearly complete rRNA genes from 371 Animalia: updated structure-based alignment and phylogenetic analysis
负责人:
Mallatt, Jon M.
关键词:
28S rRNA 18S rRNA Ribosomal rRNA genes alignment secondary structure PHASE program
DOI:
doi:10.5061/dryad.1v62kr3q
摘要:
roximately uncertain (AU) test refuted the monophyly of Mollusca and of Chordata, probably due to long-branch attraction of the highly divergent cephalopod
Data from: An R package and online resource for macroevolutionary studies using the ray-finned fish tree of life
负责人:
关键词:
Macroevolution;molecular evolution;systematics;Sequence data;Actinopterygii;software;comparative analysis;phylogenetic reconstruction
DOI:
doi:10.5061/dryad.6vg974n
摘要:
ee examples of advanced usage through the R package. First, we test for the presence of long branch attraction artifacts across the fish tree of life. The se

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