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Data from: The relative importance of modeling site pattern heterogeneity versus partition-wise heterotachy in phylogenomic inference
负责人:
关键词:
site heterogeneity;long-branch attraction;partition model;heterotachy;mixture model;gene tree heterogeneity
DOI:
doi:10.5061/dryad.68qt629
摘要:
long-branch attraction (LBA) problem for analyses employing protein-wise partitioning even when the generating model included partitioning. This LBA problem results from
Data from: Chloroplast phylogenomic analyses resolve deep-level relationships of an intractable bamboo tribe Arundinarieae (Poaceae)
负责人:
关键词:
chloroplast phylogenomics;low sequence divergence;branch length;sampling;data partitioning;Temperate woody bamboos
DOI:
doi:10.5061/dryad.d5h1n
摘要:
ors (e.g., long-branch attraction) and received support from independent indels in the genome. We then added taxa from the three Arundinarieae lineages that were not inc
Data from: Timing of morphological and ecological innovations in the cyanobacteria – a key to understanding the rise in atmospheric oxygen
负责人:
关键词:
cyanobacteria\/classification;Neoproterozoic;Cyanobacteria;phylogenetics;Paleoproterozoic;Mesoproterozoic;Evolution;cyanobacteria\/growth;Phanerozoic;oxygen;Precambrian
DOI:
doi:10.5061/dryad.11vj2
摘要:
gatus, Synechococcus elongatus, Synechococcus PCC 7335 and Acaryochloris marina) were problematic, probably due to long branch attraction artifacts. A consensus genomic tree
Data from: An empirical assessment of a single family-wide hybrid capture locus set at multiple evolutionary timescales in Asteraceae
负责人:
关键词:
Lactuca quercina L.;Antennaria geyeri A. Gray;Picris amalecitana (Boiss.) Eig;Cousinia pusilla C. Winkl.;Compositae;Pericallis murrayi (Bornm.) B.Nord;Leontodon tingitanus Boiss. & Reut. Ball;Echinops strigosus L.;Syncarpha sp. DC.;Moquinia racemosa (Spreng.) DC.;Vernonia missurica Raf.;Sonchus radicatus Aiton;Helianthus annuus L.;Stokesia laevis (Hill) Greene;Luciliocline subspicata (Wedd.) Anderb. & S.E. Freire;Pseudognaphalium obtusifolium (L. Hilliard & B.L. Burtt);Sobral & J.N.Nakaj.;Senecio flavus L.;Senecio involucratus (Kunth) DC.;Sonchus pinnatus Aiton;Centrapalus pauciflorus (Willd.) H. Rob.;Cousinia macroptera C.A. Mey.;Minasia pereirae H.Rob.;Senecio lingulatus Franch.;Tithonia rotundifolia (Mill.) S.F.Blake;Lepidaploa opposita A.M.Teles;Lychnophora granmogolensis (Duarte) D.J.N. Hind;Lactuca palmensis Bolle;Verbesina alternifolia (L.) Britton ex Kearney;Cousinia alberto regelia C. Winkl.;J.N. Nakaj. & H. Rob.;phylogenetics.;Carlina vulgaris L.;Lychnophora brunioides Mart.;Sonchus ustulatus subsp maderensis Aldridge;Helianthus argophyllus Torr. & A. Gray;Cousinia spryginii Kult.;Chronopappus bifrons (DC.) ex Pers. DC.;Antennaria corymbosa E.E. Nelson;Pericallis webbii (Sch.Bip.) Bolle;Senecio patens (Kunth) DC.;Picris hieracioides subsp. umbellata (Schrank) Ces.;Stilpnopappus tomentosus Mart. ex DC.;Lychnophora hatschbachii H.Rob.;Allocephalus gamolepis Bringel;Lipochaeta lobata (Gaud.) DC.;Lactuca serriola L.;Oedera squarrosa (L.) Anderb. & K.Bremer;Cynara cardunculus L.;Lactuca perennis L.;Carthamus tinctorius L;Pericallis echinata (L'Hér.) B.Nord.;Facelis lasiocarpa (Griseb.) Cabrera;Chresta angustifolia Gardner;Picris japonica Thunb.;Culticum canescens;Picris hieracioides subsp. hispidissima (Bartl.) Slovák & Ku?era;Antennaria flagellaris (A. Gray) A. Gray;Vernoniastrum ambiguum (Kotschy & Peyr.) H. Rob.;non-paralogy;Hyb-Seq;Lipochaeta micrantha (Nutt.) A.Gray;Rojasianthe superba Standl. & Steyerm.;Picris hieracioides subsp. hieracioides L.;Pericallis lanata (L'Hér.) B.Nord.;Piptolepis ericoides (Lam.) Sch. Bip.;Picris olympica Boiss.;Chresta plantaginifolia (Less.) Gardner;Xenophyllum lycopodioides (S.F.Blake) V.A.Funk;Lactuca orientalis Boiss.;Picris nuristanica Bornm.;Wollastonia biflora (L.) DC.;Helianthus verticillatus Small;Vernonanthura patens (Kunth) H.Rob.;Montanoa tomentosa Cerv.;Chresta harleyi H. Rob.;Antennaria anaphaloides Rydb.;Senecio nivalis (Kunth) Cuatrec.;Pericallis papyracea (DC.) B.Nord.;Cousinia strobilocephala Tscherneva & Vved.;Werneria aretioides Wedd.;Phoebanthus tenuifolius (Torr. & A.Gray) S.F.Blake;Hieracium alpinum L.;Nabalus albus (L.) Hook.;Senecio subinvolucratus Cuatrec.;Gundelia tournefortii L.;Lactuca tatarica (L.) C. A. Mey.;Taraxacum kok-saghyz L.E. Rodin;Vernonia gigantea (Walter) Trel. ex Branner & Coville;Lipochaeta subcordata A.Gray;Helianthus porteri (A. Gray) Pruski;Brachyglottis repanda J.R. Forst & G. Forst;long branches;Sonchus tuberifer Svent.;Disparago sp. Gaertn.;Chresta pacourinoides (Mart. ex DC.) Siniscalchi & Loeuille;Pericallis aurita (L'Hér.) B.Nord.;Lychnophora santosii H.Rob.;Lychnophora haplopappa sp. ined.;Chresta curumbensis (Philipson) H.Rob.;Hololepis pedunculata DC. ex Pers. DC.;Gamochaetopsis alpina (Poepp.) Anderb. & S.E. Freire;Lychnophora morii H.Rob.;Paralychnophora harleyi (H. Rob.) D.J.N. Hind;Chresta sphaerocephala DC.;hybrid capture;Asteraceae
DOI:
doi:10.5061/dryad.60vb576
摘要:
. Discussion: The approach used to build a Hyb-Seq locus dataset and methodological artefacts, such as long branch attraction, influence resoluti
Data from: Resolving rapid radiations within angiosperm families using anchored phylogenomics
负责人:
关键词:
Scirpeae;Trichophorum;Dulichieae;low-copy nuclear genes;low-level phylogenetics;Eriophorum;Scirpus;Khaosokia;Amphiscirpus;Cariceae;flowering plants;universal hybrid enrichment probes;Coalescent species tree;Carex;Calliscirpus
DOI:
doi:10.5061/dryad.55h30
摘要:
e accurate trees than sampling rapidly evolving regions prone to saturation and long-branch attraction. The robust phylogenetic estimates obtained her
Data from: The root of flowering plants and total evidence
负责人:
关键词:
Amborella;Systematic error;model fit;angiosperm origins;parametric simulations;total evidence approach
DOI:
doi:10.5061/dryad.vg97f
摘要:
to a long-branch attraction artifact that favors Amborella as sister to other angiosperms in reconstructed phylogenies. Using parametric simulations, we show that sites
Data from: An extreme case of plant-insect codiversification: figs and fig-pollinating wasps
负责人:
关键词:
Ficus; Agaonidae;host switching;Biogeography;Ficus;Coevolution;cospeciation;Agaonidae;phylogeny;Long branch attraction;Cretaceous
DOI:
doi:10.5061/dryad.hr620
摘要:
ecosystems has long intrigued biologists, but the systematic challenge posed by >750 interacting species pairs has hindered progress toward understanding
Data from: Systematics of the lizard family Pygopodidae with implications for the diversification of Australian temperate biotas
负责人:
关键词:
molecular clock;parametric bootstrapping;Biogeography;tree rooting;phylogeny;Pygopodidae;lizard
DOI:
doi:10.5061/dryad.855
摘要:
of our two outgroup taxa (Diplodactylus) to root trees properly; three different rooting locations were suggested depending upon analysis. This long-branch attraction
Data from: Detecting the anomaly zone in species trees and evidence for a misleading signal in higher-level skink phylogeny (Squamata: Scincidae)
负责人:
关键词:
sequence capture;incomplete lineage sorting;ultraconserved elements;UCE;IDBA;phylogenetics;probes;anomalous gene trees
DOI:
doi:10.5061/dryad.sf6s9
摘要:
ilar to the problem of long-branch attraction, including more data via loci concatenation will only reinforce the support for the incorrect species tree. Empirical
Data from: Reproductive ecology and isolation of Psittacanthus calyculatus and P. auriculatus mistletoes (Loranthaceae)
负责人:
Ornelas, Juan Francisco
关键词:
Hemiparasite host mistletoe pollination reproductive isolation
DOI:
doi:10.5061/dryad.6kt60
摘要:
c Psittacanthus mistletoes (c. 120 species). We aimed to investigate trait divergence linked to pollinator attraction and reproductive isolation (RI

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