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Data from: Monte Carlo Strategies for selecting parameter values in simulation experiments
负责人:
关键词:
phylogenetic analysis;Simulation;Markov chain Monte Carlo;Plant domestication;Importance sampling
DOI:
doi:10.5061/dryad.366j4
摘要:
Simulation experiments are used widely throughout evolutionary biology and bioinformatics to compare models, promote methods, and test hypotheses
Data from: Functional advantages of conserved intrinsic disorder in RNA-binding proteins
负责人:
关键词:
bioinformatics;intrinsically disordered proteins;RNA-binding
DOI:
doi:10.5061/dryad.33vn1
摘要:
en been associated with conformational flexibility, yet the extent and functional implications of their intrinsic disorder have never been fully assessed. Here, throug
Data from: Machine learning-based differential network analysis: a study of stress-responsive transcriptomes in Arabidopsis thaliana
负责人:
关键词:
Systems biology;Arabidopsis thaliana;abiotic\/environmental stress;differential network;bioinformatics;transcriptome analysis;gene coexpression network;Random Forest;Machine Learning
DOI:
doi:10.5061/dryad.41b9g
摘要:
prior to network construction, through learning the patterns of 32 expression characteristics of known stress-related genes. The retained “informati
Data from: HiMAP: robust phylogenomics from highly multiplexed amplicon sequencing
负责人:
关键词:
multiplex PCR;systematics;Tephritidae;phylogenetics;Amplicon Sequencing;phylogenomics
DOI:
doi:10.5061/dryad.6524f
摘要:
bioinformatic pipelines for locus selection based on genomic and transcriptomic data resources and post-sequencing consensus calling and alignment. This method
Data from: Allele discovery of ten candidate drought-response genes in Austrian oak using a systematically informatics approach based on 454
负责人:
关键词:
454;Quercus robur;Next Generation Sequencing;Quercus petraea;barcode
DOI:
doi:10.5061/dryad.83gf113b
摘要:
of natural selection. Beside the potential for marker development, we have created an expandable bioinformatic pipeline for the analysis of next generation sequencing data.
Data from: Automated integration of trees and traits: a case study using paired fin loss across teleost fishes
负责人:
关键词:
Phenotype;bioinformatics pipeline;Inference;paired fins;ancestral state reconstruction;evolutionary morphology;Teleostei;Fishes;ontology;missing data
DOI:
doi:10.5061/dryad.v0s27
摘要:
fin reduction and loss are thought to have occurred independently multiple times in the evolution of fishes. We developed a bioinformatics pipeline to identi
Data from: Determining the subcellular location of new proteins from microscope images using local features
负责人:
关键词:
computational biology;bioinformatics;fluorescent microscopy;Mus musculus;bioimage informatics;subcellular location;green fluorescent protein (GFP)
DOI:
doi:10.5061/dryad.2vm70
摘要:
Motivation: Evaluation of previous systems for automated determination of subcellular location from microscope images has been done using datasets
Data from: Correlation between either Cupriavidus or Porphyromonas and primary pulmonary tuberculosis found by analysing the microbiota in pati
负责人:
关键词:
DOI:
doi:10.5061/dryad.mt24h
摘要:
ysed using tools in the Ribosomal Database Project (RDP) and bioinformatics. These analyses revealed significant differences in the microbi

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