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Data from: Is diversification history of maize influencing selection of soil bacteria by roots?
- 负责人:
- Bouffaud, Marie-Lara
- DOI:
- doi:10.5061/dryad.51dd2gd0
- 摘要:
- , as confirmed by quantitative PCR and cloning/sequencing. However, these differences in bacterial root colonization did not correlate with plant microsatellite genetic distanc
Data from: Phylogenomic analysis of BAC-end sequence libraries in Oryza (Poaceae)
- 负责人:
- Cranston, Karen A.
- DOI:
- doi:10.5061/dryad.1611
- 摘要:
- ) end sequences, producing an alignment of 2.4 million nucleotides for 10 diploid species of Oryza. A supermatrix approach confirms the broad outline of previous
Data from: Free-living bacterial communities associated with tubeworm (Ridgeia piscesae) aggregations in contrasting diffuse flow hydrothermal vent
- 负责人:
- DOI:
- doi:10.5061/dryad.453f3
- 摘要:
- inly in Low Flow sequence libraries, and were affiliated with known methanotrophs and decomposers. The cooccurrence of sulfur reducers from the Deltaproteobac- teria
Data from: A comparison between transcriptome sequencing and 16S metagenomics for detection of bacterial pathogens in wildlife
- 负责人:
- 关键词:
- NGS RNA-Seq 16S metagenomics metabarcoding 454-pyrosequencing MiSeq bacteria rodent-borne zoonoses coinfections pathobiome
- DOI:
- doi:10.5061/dryad.50125
- 摘要:
- s not been assessed. Here, we compared two NGS approaches, RNA-Sequencing (RNA-Seq) and 16S-metagenomics, assessing their ability to survey neglected zoonotic bac
Data from: Finding stories in noise: mitochondrial portraits from RAD data
- 负责人:
- DOI:
- doi:10.5061/dryad.75fh336
- 摘要:
- arches and by comparisons with cytochrome b gene sequences obtained through Sanger sequencing. Finally, we investigate the organismal consequences of these data inc
Data from: Effects of rhizoma peanut cultivars (Arachis glabrata Benth.) on the soil bacterial diversity and predicted function in nitrogen fixation
- 负责人:
- 关键词:
- DOI:
- doi:10.5061/dryad.7034412
- 摘要:
- peanut cultivars in southeastern USA, coupling high-throughput 16S rRNA gene sequencing and the sequence-based function prediction with Tax4Fun. Of the 32 phyla
Data from: Variation in gut microbial communities and its association with pathogen infection in wild bumble bees (Bombus)
- 负责人:
- DOI:
- doi:10.5061/dryad.3k019
- 摘要:
- . We categorized as ‘core bacteria’ any operational taxonomic units (OTUs) with closest hits to sequences previously found exclusively or primarily in the guts
Data from: Wolbachia infection and dramatic intraspecific mitochondrial DNA divergence in a fig wasp
- 负责人:
- DOI:
- doi:10.5061/dryad.475j7p93
- 摘要:
- hia infections in 187 specimens of the fig wasp species, Ceratosolen solmsi, and found an infection prevalence of 89.3%. DNA Sequencing of 20 individuals each from
Data from: Digital fragment analysis of short tandem repeats by high-throughput amplicon sequencing
- 负责人:
- DOI:
- doi:10.5061/dryad.68mc8
- 摘要:
- High-throughput sequencing has been proposed as a method to genotype microsatellites and overcome the four main technical drawbac
Data from: Extending RAD tag analysis to microbial ecology: a comparison between multi locus sequence typing (MLST) and 2b-RAD to investigate
- 负责人:
- DOI:
- doi:10.5061/dryad.m1bm5
- 摘要:
- The advent of next-generation sequencing (NGS) has dramatically changed bacterial typing technologies, increasing our ability to differentiate