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Data from: Intra-individual polymorphism in chloroplasts from NGS data: where does it come from and how to handle it?
- 负责人：
- DOI：
- doi:10.5061/dryad.31733
- 摘要：
- Next generation sequencing allows access to a large quantity of genomic data. In plants, several studies used whole chloroplast genome sequences
Data from: Cost-effective enrichment hybridization capture of chloroplast genomes at deep multiplexing levels for popula
- 负责人：
- 关键词：
- DNA probes long range PCR MiSeq next generation sequencing plastomes whole chloroplast sequencing
- DOI：
- doi:10.5061/dryad.t6b05
- 摘要：
- the effectiveness of this protocol to retrieve 95% of the sequence of the whole chloroplast on 95 multiplexed individuals in a single MiSeq ru
Data from: Dated tribe-wide whole chloroplast genome phylogeny indicates recurrent hybridizations within Triticeae
- 负责人：
- 关键词：
- DOI：
- doi:10.5061/dryad.25743
- 摘要：
- relationships and estimate divergence times of the taxa. We present the most comprehensive dated Triticeae chloroplast phylogeny and review previous hypothese
Data from: Whole-chloroplast analysis as an approach for fine-tuning the preservation of a highly charismatic but critically endangered speci
- 负责人：
- DOI：
- doi:10.5061/dryad.6908r
- 摘要：
- ss the chloroplast using shotgun sequencing, bioinformatic extraction of chloroplast DNA and variant detection. Six chloroplast single nucleotide polymorphisms wer
Data from: Complete chloroplast genome of the genus Cymbidium: lights into the species identification, phylogenetic implications
- 负责人：
- 关键词：
- DOI：
- doi:10.5061/dryad.14214
- 摘要：
- m the complete chloroplast genome can provide effective tools for species identification and phylogenetic resolution. Results: The complete nucleotide sequences
Data from: Species level phylogeny and polyploid relationships in Hordeum (Poaceae) inferred by next-generation sequencing and in-silico cloning
- 负责人：
- DOI：
- doi:10.5061/dryad.fn2nt
- 摘要：
- olyploidization, knowledge of parental relationships is essential. One chloroplast and 12 nuclear single-copy loci were amplified by polymerase chain reaction (PCR) in al
Data from: A long PCR based approach for DNA enrichment prior to next-generation sequencing for systematic studies
- 负责人：
- DOI：
- doi:10.5061/dryad.kc75n
- 摘要：
- . Conclusions: Although here we tested this approach by sequencing plastomes, long PCR amplicons could be generated using DNA from any genome, expanding
Data from: Conflicting phylogenomic signals reveal a pattern of reticulate evolution in a recent high-Andean diversification (Asteraceae: Ast
- 负责人：
- DOI：
- doi:10.5061/dryad.cn74h
- 摘要：
- luding simulations and the detection of introgression using the D-statistic (ABBA-BABA test). We found significant incongruence among the nuclear, chloroplast
Data from: Phylogenetic utility of ycf1 in orchids: a plastid gene more variable than matK
- 负责人：
- DOI：
- doi:10.5061/dryad.q2s7h
- 摘要：
- of the branches). Here, we demonstrate the phylogenetic utility of a heretofore unused portion of a plastid protein-coding gene, hypothetical chloroplast
Data from: Where did all the trees come from? A novel multispecies approach reveals the impacts of biogeographical history and func
- 负责人：
- DOI：
- doi:10.5061/dryad.j64j0
- 摘要：
- ical rain forests in south-eastern Australia: Nightcap–Border Ranges, Dorrigo and Washpool. Methods: We assembled chloroplast genomic data from whole-genome shotgun libraries for 71 speci
