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Data from: Substantial differences in bias between single-digest and double-digest RAD-seq libraries: a case study
负责人:
关键词:
selection components analysis;Syngnathus scovelli;Next-generation sequencing;allele dropout;PCR duplicates
DOI:
doi:10.5061/dryad.qf916
摘要:
e genotyped using a double?digest RAD?seq (ddRAD?seq) protocol. We analysed the resulting Illumina sequencing data and compared the two genotyping
Data from: ddRAD?seq data reveal significant genome?wide population structure and divergent genomic regions that distinguish the mallard and close
负责人:
关键词:
sex chromosome;contemporary;population genomics;hybridization;ddRADseq;introgression;speciation
DOI:
doi:10.5061/dryad.5gk37t8
摘要:
closely related species based on multi?locus data requires substantial genomic coverage. In this study, we used ddRAD?seq to sample the genomes of five recently diverged
Data from: Applying SNP-derived molecular coancestry estimates to captive breeding programs
负责人:
关键词:
biodiversity;relatedness Subject area: Conservation genetics and biodiversity;pedigree analysis;kinship;SNP chip;ddRAD Sequencing;conservation genetics
DOI:
doi:10.5061/dryad.p380b
摘要:
digest restriction site-associated DNA (ddRAD) sequencing. Our results demonstrated that estimates of allele sharing (AS) between pairs of individuals
Data from: Conflicting phylogenomic signals reveal a pattern of reticulate evolution in a recent high-Andean diversification (Asteraceae: Astereae
负责人:
关键词:
reticulate evolution;Astereae;Asteraceae;ddRAD;hybridization;rapid diversification;Diplostephium;introgression;phylogenomics;genome skimming
DOI:
doi:10.5061/dryad.cn74h
摘要:
study analyzes the phylogenetic signal of genomic regions with different inheritance patterns using genome skimming and ddRAD-seq in a species-rich Andean
Data from: A RAD-sequencing approach to genome-wide marker discovery, genotyping, and phylogenetic inference in a diverse radiation of primates
负责人:
关键词:
double-digest RAD sequencing;reduced representation sequencing;non-model taxa;phylogenetics;New World primates;SNP markers;20-25 mya;Platyrrhini;restriction enzyme digests
DOI:
doi:10.5061/dryad.85jn3
摘要:
representation method (ddRAD-seq) for identifying and genotyping large numbers of SNP loci for taxa from across the New World monkeys, a diverse radiation of primates tha
Data from: Efficiency of ddRAD target enriched sequencing across spiny rock lobster species (Palinuridae: Jasus)
负责人:
关键词:
Jasus edwardsii;variant-calling file;probe sequences;Sagmariasus verreauxi;probes sequences
DOI:
doi:10.5061/dryad.3dk40
摘要:
Double digest restriction site-associated DNA sequencing (ddRADseq) and target capture sequencing methods are used to explore population
Data from: Application of a dense genetic map for assessment of genomic responses to selection and inbreeding in Heliothis virescens
负责人:
关键词:
Heliothis virescens;Colonization;ddRAD-seq;Genetic Variation;Inbreeding;linkage map
DOI:
doi:10.5061/dryad.567v8
摘要:
tory colonies have been selected for Bacillus thuringiensis (Bt) resistance. We developed 350-bp double-digest restriction-site associated DNA-sequencing (ddRAD
Data from: Less is more: extreme genome complexity reduction with ddRAD using Ion Torrent semiconductor technology
负责人:
关键词:
Eurasian perch SNP development and validation de novo assembly next-generation sequencing population genomics DNA pooling
DOI:
doi:10.5061/dryad.s2405
摘要:
sian perch. We expect that our ddRAD sequencing protocol for semiconductor sequencing technology will be useful alternative for currently available RAD protocols.
Data from: RADcap: sequence capture of dual-digest RADseq libraries with identifiable duplicates and reduced missing data
负责人:
关键词:
Target Enrichment;Reduced Representation Libraries;3RAD;ddRAD;Wisteria;Illumina
DOI:
doi:10.5061/dryad.ss6c9
摘要:
methods, such as restriction site associated DNA sequencing (RADseq) and sequence capture, are constrained by costs associated with inefficient

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