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Data from: Out of the testis, into the ovary: biased outcomes of gene duplication and deletion in Drosophila
- 负责人:
- DOI:
- doi:10.5061/dryad.742564m
- 摘要:
- Gene turnover is a key source of adaptive variation. Yet most evolutionary studies have focused on gene duplication, dismissing gene deleti
Data from: Genome-scale phylogenetic analysis finds extensive gene transfer among fungi
- 负责人:
- 关键词:
- birth\u2013death models;gene transfer;gene tree-species tree;gene duplication;genomics;statistics
- DOI:
- doi:10.5061/dryad.r2t49
- 摘要:
- using a model of gene duplication, loss and transfer. We compare their merits and their ability to quantify the role of transfers, and assess the impact
Data from: Domain loss facilitates accelerated evolution and neofunctionalization of duplicate snake venom metalloproteinase toxin genes
- 负责人:
- 关键词:
- domain loss;gene duplication;metalloproteinase;Serpentes;positive selection;molecular evolution
- DOI:
- doi:10.5061/dryad.8979
- 摘要:
- complex evolutionary histories as a result of frequent gene duplication acting in concordance with positive selection pressures. Alterati
Data from: Consequences of whole-genome triplication as revealed by comparative genomic analyses of the wild radish Raphanus raphanistrum and thr
- 负责人:
- DOI:
- doi:10.5061/dryad.t50j5
- 摘要:
- d postpolyploidization. Overall, our study provides new insights into the processes of plant duplicate loss, retention, and functional divergence and highlights the ne
Data from: Ancestral polyploidy in seed plants and angiosperms
- 负责人:
- Jiao, Yuannian
- DOI:
- doi:10.5061/dryad.8546
- 摘要:
- Whole-genome duplication (WGD), or polyploidy, followed by gene loss and diploidization has long been recognized as an important evoluti
Data from: Cytochrome P450 diversification and hostplant utilization patterns in specialist and generalist moths: birth, death, and adaptation
- 负责人:
- DOI:
- doi:10.5061/dryad.kv67m
- 摘要:
- es. Functional and phylogenetic data suggest a correlation between highly dynamic loci (reflective of extensive gene duplication, functionalization, and in som
Data from: Transcriptome analysis indicates considerable divergence in alternative splicing between duplicated genes in Arabidopsis thaliana
- 负责人:
- DOI:
- doi:10.5061/dryad.g7b25
- 摘要:
- Gene and genome duplication events have created a large number of new genes in plants that can diverge by evolving new express
Data from: A Bayesian method for analyzing lateral gene transfer
- 负责人:
- 关键词:
- Gene duplication Lateral gene transfer Horizontal gene transfer Gene loss Phylogenetics Phylogenomics MCMC Bayesian Reconciliation
- DOI:
- doi:10.5061/dryad.f78r2
- 摘要:
- ral remain debated. We present a Bayesian MCMC-based method that integrates gene duplication, gene loss, LGT, and sequence evolution, and apply the method
Data from: Extensive horizontal gene transfer, duplication, and loss of chlorophyll synthesis genes in the algae
- 负责人:
- 关键词:
- DOI:
- doi:10.5061/dryad.3ss6p
- 摘要:
- de oxidoreductases. Whereas the distribution of these enzymes in cyanobacteria and land plants is well understood, the presence, loss, duplication, and replacement of these gene
Data from: Integrating sequence evolution into probabilistic orthology analysis
- 负责人:
- DOI:
- doi:10.5061/dryad.4r910
- 摘要:
- a gene duplication - is of central importance in computational biology, genome annotation, and phylogenetic inference. In particular, an orthologous