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Data from: Efficient exploration of the space of reconciled gene trees
- 负责人：
- DOI：
- doi:10.5061/dryad.pv6df
- 摘要：
- Gene trees record the combination of gene-level events, such as duplication, transfer and loss, and species-level events, such as speciati
Data from: Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees
- 负责人：
- DOI：
- doi:10.5061/dryad.7881
- 摘要：
- gene duplications and losses. Gene tree parsimony is a phylogenetic optimization criterion in which a species tree is selected that minimizes the number of gene duplication
Data from: SimPhy: phylogenomic simulation of gene, locus and species trees
- 负责人：
- DOI：
- doi:10.5061/dryad.707td
- 摘要：
- ng, gene duplication and loss, horizontal gene transfer—all three potentially leading to species tree/gene tree discordance—and gene conversion. SimPhy implements
Data from: The relationship of recombination rate, genome structure, and patterns of molecular evolution across angiosperms
- 负责人：
- DOI：
- doi:10.5061/dryad.10nh8
- 摘要：
- codon usage by GC biased gene conversion, contribute to complex histories of gene duplication and loss through tandem duplication, and enhance
Data from: Adaptive evolution and divergent expression of heat stress transcription factors in grasses
- 负责人：
- 关键词：
- cluster of orthologous genes expression divergence grass family heat stress transcription factors positive selection
- DOI：
- doi:10.5061/dryad.11243
- 摘要：
- s were present in the ancestral grass genome. However, 9 duplication and 4 gene-loss events were identified in the tested genomes. A maximum-likeli
Data from: Evaluating summary methods for multi-locus species tree estimation in the presence of incomplete lineage sorting
- 负责人：
- DOI：
- doi:10.5061/dryad.310q3
- 摘要：
- Species tree estimation is complicated by processes, such as gene duplication and loss and incomplete lineage sorting (ILS), that cause discordance
Data from: Hemocyanin gene family evolution in spiders (Araneae), with implications for phylogenetic relationships and divergence ti
- 负责人：
- DOI：
- doi:10.5061/dryad.105c0
- 摘要：
- lineages, however, hemocyanin evolution has been a dynamic process with extensive paralog duplication and loss. We have obtained hemocyanin gene
Data from: A Bayesian supertree model for genome-wide species tree reconstruction
- 负责人：
- DOI：
- doi:10.5061/dryad.74922
- 摘要：
- ely, gene duplication and loss, incomplete lineage sorting or horizontal gene transfer. In this manuscript we address for the first time the problem of species tree
Data from: Divergent subgenome evolution after allopolyploidization in African clawed frogs (Xenopus)
- 负责人：
- DOI：
- doi:10.5061/dryad.2q0t408
- 摘要：
- Whole genome duplication (WGD), the doubling of the nuclear DNA of a species, contributes to biological innovation by creating genetic
Data from: Unsorted homology within locus and species trees
- 负责人：
- 关键词：
- Gene duplication and loss;homology;gene family;Species tree;Locus tree;incomplete lineage sorting
- DOI：
- doi:10.5061/dryad.87k57
- 摘要：
- relationships have been defined at the molecular level: orthology, paralogy and xenology. In brief, if two gene copies arose by duplication they are paralogs
