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Data from: A comparison between transcriptome sequencing and 16S metagenomics for detection of bacterial pathogens in wildlife
负责人:
关键词:
NGS RNA-Seq 16S metagenomics metabarcoding 454-pyrosequencing MiSeq bacteria rodent-borne zoonoses coinfections pathobiome
DOI:
doi:10.5061/dryad.50125
摘要:
s not been assessed. Here, we compared two NGS approaches, RNA-Sequencing (RNA-Seq) and 16S-metagenomics, assessing their ability to survey neglected zoonotic bacteria
Data from: Bacterial characterization of Beijing drinking water by flow cytometry and MiSeq sequencing of the 16S rRNA gene
负责人:
关键词:
Flow cytometry;MiSeq sequencing;Opportunistic pathogenic bacteria;Drinking water quality monitoring;Fluorescence fingerprints
DOI:
doi:10.5061/dryad.55nb0
摘要:
Flow cytometry (FCM) and 16S rRNA gene sequencing data are commonly used to monitor and characterize microbial differenc
Data from: Rapid species-level identification of vaginal and oral lactobacilli using MALDI-TOF MS analysis and 16S rDNA sequencing
负责人:
关键词:
Lactobacilli;16S rDNA sequencing;MALDI-TOF MS Analysis;Lactobacilli identification
DOI:
doi:10.5061/dryad.78vs2
摘要:
to identify lactobacilli to the species level. Even though some results were ambiguous while 16S rDNA sequencing yielded confident speci
Data from: Phylogenetic relatedness determined between antibiotic resistance and 16S rRNA genes in actinobacteria
负责人:
关键词:
Actinobacteria;resistance genes;phylogeny;Actinobacteria;sequenced genome database;16S rRNA diversity;thin layer chromatography
DOI:
doi:10.5061/dryad.td742
摘要:
, distances of erm gene sequences were significantly correlated to phylogenetic distances based on 16S rRNA genes, while ABC transporter gene distances wer
Data from: COI is better than 16S rRNA for DNA barcoding Asiatic salamanders (Amphibia: Caudata: Hynobiidae)
负责人:
Xia, Yun
关键词:
Amphibians DNA Barcoding species identification cryptic species
DOI:
doi:10.5061/dryad.p4r84
摘要:
to be highly variable in amphibians, sequencing is often challenging. Consequently, another mtDNA gene, 16S rRNA gene, is often advocated for amphibian barcoding
Data from: Amplicon pyrosequencing late Pleistocene permafrost: the removal of putative contaminant sequences and small-scale reproducibility
负责人:
Porter, Teresita
关键词:
ancient DNA contamination reproducibility barcoding Beringia amplicon pyrosequencing
DOI:
doi:10.5061/dryad.4m7d1
摘要:
DNA sequencing of ancient permafrost samples can be used to reconstruct past plant, animal and bacterial communities. In this study, we asse
Data from: ITS all right mama: Investigating the formation of chimeric sequences in the ITS2 region by DNA metabarcoding analyses of fungal mock
负责人:
关键词:
DNA metabarcoding;Chimeric sequences;PCR bias;UCHIME;microbial ecology
DOI:
doi:10.5061/dryad.n4cv3
摘要:
and 454 sequencing of the ITS2 region from fungal mock communities of different complexities. We evaluated the chimera detecting ability of two common chimera-checking
Data from: Drivers and patterns of microbial community assembly in a Lyme disease vector
负责人:
关键词:
Lyme disease;NexGen sequencing;tick;16S rRNA;Ixodes pacificus;Rickettsia;microbiome;community assembly
DOI:
doi:10.5061/dryad.2nv32qh
摘要:
understanding of the processes shaping the vector microbiome and the interactions therein. Here we use 16S rRNA sequencing and apply a community ecology framework
Data from: A genetic discontinuity in root-nodulating bacteria of cultivated pea in the Indian trans-Himalayas
负责人:
关键词:
Evolutionary relationships;Rhizobium leguminosarum symbiovar viciae;Biogeography;Rhizobium leguminosarum biovar viciae;Indian trans-Himalayas;Rhizobium leguminosarum bv. viciae
DOI:
doi:10.5061/dryad.21rt0fp0
摘要:
of the trans-Himalayan valleys of Lahaul and Spiti in the state of Himachal Pradesh of India were studied using 16S rRNA gene PCR-RFLP, ERIC-PCR, sequencing
Data from: Kinship, inbreeding, and fine-scale spatial structure influence gut microbiota in a hindgut-fermenting tortoise
负责人:
关键词:
microsatellites;fecal microbiota;Gopher tortoise;16S rRNA sequencing;Gopherus polyphemus;microbial diversity
DOI:
doi:10.5061/dryad.54bm8
摘要:
in an obligate herbivorous reptile. Using multiplexed 16S rRNA gene sequencing, we characterized the faecal microbial community of a population of gopher tortoise

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