A fingerprint identification system, a fingerprint processing method, and a fingerprint processing apparatus are provided in embodiments of the present disclosure, which pertains to the filed of the fingerprint identification technologies. The method includes: acquiring, in a registration mode, multiple pictures obtained via fingerprint scanning by a designated zone in a scanning area of a sensor when a finger of a user swipes through the designated zone; stitching the multiple pictures to form a fingerprint image according to feature values which are same in multiple pictures; and storing the fingerprint image or feature values of the fingerprint image into a registration template. According to the present disclosure, scanning time may be reduced and operations are simple, and accordingly efficiency of the fingerprint registration is improved.