A method of corneal implantation with cross-linking is disclosed herein. In one or more embodiments, the method includes the steps of: (i) forming a flap in a cornea of an eye so as to expose a stromal tissue of the cornea underlying the flap; (ii) pivoting the flap so as to expose the stromal tissue of the cornea underlying the flap; (iii) inserting an implant under the flap so as to overlie the stromal tissue of the cornea, wherein the implant is cross-linked so as to prevent an immune response to the implant and/or rejection of the implant by the patient; and (iv) covering the cross-linked implant with the flap, the cross-linked implant being surrounded entirely by the stromal tissue of the cornea.