A method for position tracking includes receiving signals from a main position transducer at a distal end of a medical probe via wiring traversing the probe to a connector at a proximal end of the probe, for connection to a processor, which processes the signals to find a first position of the distal end. Calibration data with respect to an interference introduced into the signals at the connector is collected as a function of a position of the proximal end. A second position of an auxiliary position transducer at the proximal end of the probe is measured. The interference in the signals is canceled responsively to the measured second position and the calibration data. The first position is calculated based on the signals, after canceling the interference.
