A medical image processing apparatus, having a processor configured to divide brains included in a brain image and a standard brain image into a plurality of regions corresponding to each other, calculate a first correction amount between the pixel value of a first reference pixel included in each of the plurality of region in the brain image and the pixel value of a second reference pixel and a second correction amount for matching first other pixel values other than the first reference pixel included in each of the plurality of regions in the brain image with pixel values of second other pixels, and correct the brain image based on the first correction amount and the second correction amount.
