A system and method to compensate for the deformation of an eye requires calculation of an induced deformation angle Ψ, wherein the deformation is intentionally induced during laser surgery by a contact lens, and a refraction angle φ. Specifically, during laser surgery, the cornea of an eye is typically stabilized by a contact lens. This deforms the cornea. When the contact lens is removed after the surgery, the cornea recovers from the deformation. For the present invention, the angle Ψ is calculated, and corrected by the angle φ, so that surfaces altered during surgery (e.g. by LIOB) will become substantially parallel to incoming light in the eye, after the contact lens has been removed after surgery.
