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[学术文献 ] Evaluation of Indian Mustard Genotypes for White Rust Resistance Using BjuWRR1Gene and Their Phenotypic Performance 进入全文
Agronomy
The present investigation was carried out to identify the potential donors of resistant gene(s)/the source of white rust disease in B. juncea using 30 genotypes, including locally adapted accessions and advanced breeding lines. Out of 30 genotypes, ten lines viz. Bio-YSR, CAULC-1, CAULC-2, CAULC-3, CAULC-4, CAURM-2, CAULR-7, CAURM-4, CAURM 4-1, and CAURM 4-2 exhibited a lower PDI value (lesser than mean 10.83) with a superior agronomic performance related with the disease. The evaluation of these ten genotypes for the presence of the BjuWRR1 gene using a gene-based marker depicted the presence of the functional allele of the BjuWRR1 gene in the five genotypes viz., Bio-YSR, CAULC-1, CAULC-3, CAURM 4-1 and CAURM 4-2. When compared with the sequenced amplicon of these genotypes, it is found to be identical with that of an east European Brassica juncea line, Donskaja-IV, the completely resistant genotype against various isolates of Albugo candida. The findings from the present study suggested that besides Bio-YSR, the local lines of Manipur CAULC-1 (Local Yella of Potshangbam) and CAULC-3 (Local Yella of Kakching Lamjao) can be used as the potential white rust resistance sources/donors in disease resistance breeding programmes for the development of elite B. juncea cultivars in the future. In addition to the local lines, two improved advanced lines, viz. CAURM 4-1 and CAURM 4-2, obtained from a hybridization programme, may be further evaluated for releasing resistant varieties against white rust.
[学术文献 ] Sinapis genomes provide insights into whole-genome triplication and divergence patterns within tribe Brassiceae 进入全文
The Plant Journal
Sinapis alba and Sinapis arvensis are mustard crops within the Brassiceae tribe of the Brassicaceae family, and represent an important genetic resource for crop improvement. We performed the de novo assembly of Brassica nigra, S. alba, and S. arvensis, and conducted comparative genomics to investigate the pattern of genomic evolution since an ancient whole-genome triplication event. Both Sinapis species retained evidence of the Brassiceae whole-genome triplication approximately 20.5 million years ago (Mya), with subgenome dominance observed in gene density, gene expression, and selective constraint. While S. alba diverged from the ancestor of Brassica and Raphanus at approximately 12.5 Mya, the divergence time of S. arvensis and B. nigra was approximately 6.5 Mya. S. arvensis and B. nigra had greater collinearity compared with their relationship to either Brassica rapa or Brassica oleracea. Two chromosomes of S. alba (Sal03 and Sal08) were completely collinear with two ancestral chromosomes proposed in the Ancestral Crucifer Karyotype (ACK) genomic block model, the first time this has been observed in the Brassiceae. These results are consistent with S. alba representing a relatively ancient lineage of the species evolved from the common ancestor of tribe Brassiceae, and suggest that the phylogeny of the Brassica and Sinapis genera requires some revision. Our study provides new insights into the genome evolution and phylogenetic relationships of Brassiceae and provides genomic information for genetic improvement of these plants.
[学术文献 ] Transcriptomic and metabolomic analyses reveal the mechanism of uniconazole inducing hypocotyl dwarfing by suppressing BrbZIP39-BrPAL4 module mediating lignin biosynthesis in flowering Chinese cabbage 进入全文
Front Plant Sci
Uniconazole, a triazole plant growth regulator, is widely used to regulate plant height and prevent the overgrowth of seedlings. However, the underlying molecular mechanism of uniconazole in inhibiting the hypocotyl elongation of seedlings is still largely unclear, and there has been little research on the integration of transcriptomic and metabolomic data to investigate the mechanisms of hypocotyl elonga-tion. Herein we observed that the hypocotyl elongation of flowering Chinese cabbage seedings was significantly inhibited by uniconazole. Interestingly, based on combined transcriptome and metabolome analyses, we found that the “phenylpropanoid biosynthesis” pathway was significantly affected by uniconazole. In this pathway, only one member of the portal enzyme gene family, named BrPAL4, was remarkably downregulated, which was related to lignin biosynthesis. Furthermore, the yeast one-hybrid and dual-luciferase assays showed that BrbZIP39 could directly bind to the promoter region of BrPAL4 and activate its transcript. The virus-induced gene silencing system further demonstrated that BrbZIP39 could positively regulate hypocotyl elongation and the lignin biosynthesis of hypocotyl. Our findings provide a novel insight into the molecular regulatory mechanism of uniconazole inhibiting hypocotyl elongation in flowering Chinese cabbage and confirm, for the first time, that uniconazole decreases lignin content through repressing the BrbZIP39-BrPAL4 module-mediated phenylpropanoid biosynthesis, which leads to the hypocotyl dwarfing of flowering Chinese cabbage seedlings.
[学术文献 ] Isolation of Three Metallothionein Genes and Their Roles in Mediating Cadmium Resistance 进入全文
Agronomy
Isolating the genes responsible for cadmium (Cd) accumulation and tolerance in oilseed rape and uncovering their functional mechanism is of great significance for guiding genetic improve-ment to cope with heavy metal pollution. In this study, we screened the cDNA library of Brassica napus cv. Westar using a yeast genetic complementation system and isolated BnMT2-22a, BnMT2-22b and BnMT3b, which can mediate Cd tolerance in yeast. They all have two cysteine-rich domains in their sequence. Ectopic expression of these MTs demonstrated that all of them enhanced Cd and Cu tolerance in yeast, but had no effect on Mn and Zn tolerance. The fusion of the red fluorescent protein mRFP did not affect their function in mediating Cd tolerance, and using these functional fusion proteins we observed that they were all localized in cytosol. Meanwhile, their expression in yeast did not affect the accumulation of Cd in the yeast transformants. Gene expression analyses found that BnMT2-22a, BnMT2-22b and BnMT3b were all induced by Cd in roots, and BnMT3b was also significantly induced in shoots. These results indicate that the genes BnMT2-22a, BnMT2-22b and BnMT3b isolated with cDNA library screening can mediate Cd tolerance, and they may detoxify Cd via cytosolic chelation.
[学术文献 ] SNP and Haplotype Variability in the BnP5CR2 Gene and Association with Resistance and Susceptible Cultivars for Sclerotinia sclerotiorum in Brassica napus 进入全文
Agronomy
Sclerotinia sclerotiorum is a serious disease of oil crop. The P5CR gene is the first gene reported to be associated with resistance to Sclerotinia infection in soybeans, and its closest homologs are located on chromosomes A10 and C09 of Brassica napus. We named these BnP5CR1 and BnP5CR2, respectively. The purpose of this study was to examine the single-nucleotide polymorphism (SNP) and haplotype diversity (Hd) of BnP5CR2 among canola cultivars with different levels of resistance to S. sclerotiorum as well as the expression patterns of BnP5CR2 via an association analysis using resistant and susceptible cultivars of B. napus. The results can thus provide information for future research on the mechanisms of disease resistance to S. sclerotiorum and the breeding of resistant canola cultivars. A total of 95 and 12 polymorphic sites were detected in 1870 and 678 SNP sites in 16 BnP5CR2 and their coding DNA sequence (CDS) population, respectively. A total of six different haplotypes (H1–H6) were inferred from the 16 BnP5CR2 gene-CDS that contributed to the high level of polymorphism. Hd was equal to 0.617, and H1 shared by 10 cultivars was the dominant haplotype, suggesting that H1 is an ancient haplotype among the BnP5CR2 genes. H6 and H5 haplotpypes were present in Nan12R and ZhongYou821, respectively. The expression level in vitro of the BnP5CR2 between Nan12R and ZhongYou821 was significantly different. The upregulated expression of BnP5CR2 in resistant cultivars was higher than that of susceptible cultivars under 6 h, 12 h, 24 h, and 36 h treatments of pathogen stress, among which the expression level was significantly increased at 6 h, 12 h and 36 h in resistant cultivars, and the difference reached a highly significant level at 6 h (p < 0.01). The two cultivars with clear differences in expression features possessed different BnP5CR2 gene-CDS-haplotypes, indicating that gene-CDS-haplotype diversity may have greater power than SNPs for the detection of causal genes for quantitative traits.
[学术文献 ] Glucosinolate-derived amine formation in Brassica oleracea vegetables 进入全文
Food Chemistry
Glucosinolates are precursors of bioactive and health-promoting isothiocyanates (ITCs). Upon enzymatic hy-drolysis, Brassica vegetables, such as cabbage, also often yield nitriles and epithionitriles as main products next to ITCs. Here, we show that amines can be additional main enzymatic hydrolysis products of glucosinolates in Brassica vegetables. We propose that a plant endogenous ITC hydrolase (ITCase) is responsible for the enzymatic-like conversion of ITCs to amines in cabbage samples. This ITCase seems to have high activity towards alkenyl ITCs like allyl ITC and lower activity towards methylthioalkyl ITCs, and not to converting methyl-sulfinylalkyl ITCs like sulforaphane. In contrast, during heat treatment of homogenized cabbage material, methyl-sulfinylalkylamine levels increased by 400 % after 2 h of heating, which is likely due to thermal decomposition of ITCs, whereas alkenyl amine levels did not change due to heat treatment. The results show that amines from glucosinolates are part of the human diet.
