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Data from: Squamate Conserved Loci (SqCL): a unified set of conserved loci for phylogenomics and population genetics of squamate reptiles
负责人:
Singhal, Sonal
关键词:
target capture phylogenomics comparative population genomics squamate reptiles Reptiles
DOI:
doi:10.5061/dryad.r0q02
摘要:
design. Target capture for vertebrate animals is currently dominated by two approaches – anchored hybrid enrichment (AHE) and ultraconserved elements (UCE
Data from: The acacia ants revisited: convergent evolution and biogeographic context in an iconic ant/plant mutualism
负责人:
关键词:
Pseudomyrmex_micans;Pseudomyrmex_particeps;Vachellia gentlei;Vachellia sphaerocephala;Vachellia farnesiana;Vachellia anegadensis;Pseudomyrmex_mixtecus;Pseudomyrmex ferrugineus;Pseudomyrmex_evitus;Cenozoic;Vachellia vernicosa;Pseudomyrmex_spinicola;Formicidae;Pseudomyrmex peperi;Pseudomyrmex laevifrons;Vachellia cornigera;Vachellia schaffnerii;Vachellia mayana;Pseudomyrmex mixtecus;Vachellia cedilloi;Pseudomyrmex_flavicornis;Pseudomyrmex evitus;Pseudomyrmex haytianus;Pseudomyrmex_janzeni;Pseudomyrmex particeps;Pseudomyrmex satanicus;Vachellia macracantha;Pseudomyrmex perboscii;Pseudomyrmex_obtusus;Vachellia constricta;Pseudomyrmex feralis;Neogene;convergence;Pseudomyrmex_haytianus;Vachellia campechiana;Vachellia tortuosa;Pseudomyrmex obtusus;Pseudomyrmex flavicornis;Pseudomyrmex_feralis;Pseudomyrmex_veneficus;Pseudomyrmex janzeni;Vachellia chiapensis;Vachellia caven;Vachellia amentacea;Pseudomyrmex depressus;Pseudomyrmex micans;Pseudomyrmex nigrocinctus;Pseudomyrmex_peperi;Vachellia collinsii;phylogenomics;Mesoamerica;Pseudomyrmex_nigrocinctus;Vachellia roigii;multispecies interactions;Vachellia hindsii;ultraconserved elements;Pseudomyrmex_depressus;Vachellia pennatula;Vachellia schottii;Pseudomyrmex_satanicus;Pseudomyrmex spinicola;Vachellia melanoceras;Pseudomyrmex_ferrugineus;Pseudomyrmex_perboscii;Pseudomyrmex veneficus;Pseudomyrmex_laevifrons;Vachellia globulifera
DOI:
doi:10.5061/dryad.3d31q
摘要:
h interactions in a temporal and geographical context. We use a phylogenomic approach—ultraconserved element sequence capture—to inve
Data from: Phylogenomic analysis of carangimorph fishes reveals flatfish asymmetry arose in a blink of the evolutionary eye
负责人:
关键词:
UCE;ultraconserved elements;carangimorpha;Carangidae;Pleuronectiformes
DOI:
doi:10.5061/dryad.2fj55
摘要:
non-stationarity and incomplete lineage sorting (ILS). We tackle this phylogenetic problem using a sequence dataset comprising more than one thousand ultraconserved
Data from: Evolutionary history of endemic Sulawesi squirrels constructed from UCEs and mitogenomes sequenced from museum specimens
负责人:
关键词:
Species tree;Miocene-present;Sciuridae;Ancient introgression;ultraconserved elements;Rubrisciurus;Miocene-Holocene;Hyosciurus;Prosciurillus
DOI:
doi:10.5061/dryad.7v5p3
摘要:
. High throughput sequencing technology was used to generate whole mitochondrial genomes and a panel of nuclear ultraconserved elements providing a large genome-wide datase
Data from: Dense geographic and genomic sampling reveals paraphyly and a cryptic lineage in a classic sibling species complex
负责人:
关键词:
Empidonax difficilis \/ occidentalis \/ flavescens \/ flaviventris;ultraconserved elements;RADseq;Tyrannidae;phylogenomics
DOI:
doi:10.5061/dryad.nj16d88
摘要:
hips of southern populations remain obscure. In this paper, we use dense genomic and geographic sampling across the majority of the range of the E. difficilis
Data from: Hidden histories of gene flow in highland birds revealed with genomic markers
负责人:
关键词:
gene flow;systematics;Aphelocoma;Quaternary;Aphelocoma wollweberi;phylogeography;Aphelocoma ultramarina;Birds;introgression;Aves;Genomic;speciation
DOI:
doi:10.5061/dryad.s8v80
摘要:
histories of gene flow in a small sample of nuclear markers. We tested for these ‘hidden histories’ using genomic markers known as ultraconserved elements
Data from: Phylogenomic analyses of more than 4000 nuclear loci resolve the origin of snakes among lizard families
负责人:
关键词:
species-tree;Snakes;phylogenomics;lizards
DOI:
doi:10.5061/dryad.66gt5
摘要:
s remained controversial. Here we used targeted sequence capture to obtain data from 4178 nuclear loci from ultraconserved elements from 32 squamate taxa
Data from: Evf2 lncRNA/BRG1/DLX1 interactions reveal RNA-dependent inhibition of chromatin remodeling
负责人:
关键词:
Coffin Siris;DLX1;homeodomain proteins;transcriptional regulation;Chromatin remodeling;mass spectrometry;long non-coding RNA;Evf2;Ribonucleic acid protein complex (RNP);promiscuous RNA binding;BRG1 (SMARCA4)
DOI:
doi:10.5061/dryad.82gn0
摘要:
eviously, we showed that Evf2, the first described ultraconserved lncRNA, increases the association of transcriptional activators (DLX homeodomain proteins
Data from: Expanding anchored hybrid enrichment to resolve both deep and shallow relationships within the spider tree of life
负责人:
关键词:
Araneomorphae;Arachnida;Mygalomorphae;Aphonopelma;Conserved regions;ultraconserved elements;Araneae;Aptostichus;Anchored phylogenomics;targeted sequence capture;Anchored Hybrid Enrichment
DOI:
doi:10.5061/dryad.5027d
摘要:
l spiders to identify exon boundaries. Conserved regions with variable flanking regions were then sought across the tick genome, three published ara

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