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Data from: From the mountains to the coast and back again: ancient biogeography in a radiation of short-range endemic harvestmen from California
负责人:
关键词:
BioGeoBEARS;Multispecies coalescent;short-range endemism;Opiliones;Phalangodidae;Eocene;vicariance;Pliocene;Oligocene;historical biogeography;Calicina;Miocene;Laniatores
DOI:
doi:10.5061/dryad.70h1h
摘要:
ibrated species tree for 21 of 25 described Calicina species using multiple genes and multilocus coalescent-based methods. This species tree was used as a framework
Data from: Biogeographical evidence for common vicariance and rare dispersal in a southern Appalachian harvestman (Sabaconidae, Sabacon cavicolens)
负责人:
关键词:
glacial refugia;competitive exclusion;short-range endemism;Sabaconidae;Opiliones;long distance dispersal;Sabacon;riverine barrier;Holocene;Dyspnoi;cryptic species;Pleistocene
DOI:
doi:10.5061/dryad.mk32s
摘要:
ng multispecies coalescent analyses. We also tested whether riverine barriers are associated with mitochondrial genealogical structuring, focusing on multiple rivers
Data from: SimPhy: phylogenomic simulation of gene, locus and species trees
负责人:
关键词:
Multilocus Coalescent;Species tree;gene family evolution;Multispecies coalescent;incomplete lineage sorting;Simulation;substitution rate;Gene duplication and loss;gene conversion;Locus tree;Horizontal gene transfer
DOI:
doi:10.5061/dryad.707td
摘要:
ng, gene duplication and loss, horizontal gene transfer—all three potentially leading to species tree/gene tree discordance—and gene conversion. SimPhy implement
Data from: The identification of the closest living relative(s) of tetrapods: phylogenomic lessons for resolving short ancient internodes
负责人:
关键词:
Species tree;lungfish;Coalescence;phylogenomic;long-branch attraction;model misspecification;likelihood mapping;Gene tree;coelacanth;Systematic error;Compositional heterogeneity;missing data
DOI:
doi:10.5061/dryad.gd74v
摘要:
and applied different correction techniques. A multispecies coalescent approach is used to account for deep coalescence that might come from the short and deep
Data from: Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model
负责人:
关键词:
Mammals;cds sequences of 447 genes used in the study
DOI:
doi:10.5061/dryad.3629v
摘要:
and taxa, which produced strongly conflicting topologies. In contrast, the coalescent methods, which accommodate gene tree heterogeneity, yield a phylogeny
Data from: Leapfrogging the Mexican highlands: influence of biogeographical and ecological factors on the diversification of highland species
负责人:
关键词:
Sarcohyla calthula;Hylidae;Sarcohyla bistincta;phylogeography;population structure;niche modeling;Sarcohyla pentheter
DOI:
doi:10.5061/dryad.72r4b86
摘要:
ncta. A species tree analysis using the multispecies coalescent model did not support the monophyly of the five S. bistincta populations. We used niche modelling
Data from: Limitations of species delimitation based on phylogenetic analyses: a case study in the (Hypogymnia hypotrypa) group (Parmeliace
负责人:
关键词:
DOI:
doi:10.5061/dryad.5k7b5
摘要:
: the “Automatic Barcode Gap Discovery” (ABGD), the Poisson tree process model (PTP), the General Mixed Yule Coalescent (GMYC), and the multispecies coalescent approa
Data from: Unraveling historical introgression and resolving phylogenetic discord within Catostomus (Osteichthys: Catostomidae)
负责人:
关键词:
Catostomus;Patterson\u2019s D-statistic;ddRAD;Phylogenetic Incongruence;hybridization;introgression;Catostomus spp.
DOI:
doi:10.5061/dryad.8f1j5nd
摘要:
multispecies coalescent and concatenated approaches. Patterson's D-statistic was applied to resolve potential discord, examine introgression, and test the putati
Data from: Parallel plumage color evolution and introgressive hybridization in wheatears
负责人:
关键词:
melanin-based coloration;Oenanthe cypriaca;Oenanthe deserti;standing genetic variation;Oenanthe pleschanka;Oenanthe melanoleuca;introgression;incomplete lineage sorting;Oenanthe hispanica
DOI:
doi:10.5061/dryad.6d006j3
摘要:
on evolved in parallel. Multispecies coalescent analyses of about 20’000 SNPs obtained from RAD data mapped to a draft genome assembly resolve the species

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