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Data from: Microevolutionary processes generate phylogenomic discordance at ancient divergences
负责人:
关键词:
Macroevolution;Coleoptera;Carabidae;Models\/Simulations;Cretaceous;Coalescent Theory;Jurassic;Adephaga;Mammalia;Harpalinae;Angiospermae;Lepidoptera;phylogenetics;Nymphalidae;Cenozoic;Aves;speciation
DOI:
doi:10.5061/dryad.88qf4
摘要:
divergences. I used multispecies coalescent models to determine the impact of stochastic processes on deep phylogenomic histories. Here I show phylogenomic
Data from: Robustness to divergence time underestimation when inferring species trees from estimated gene trees
负责人:
关键词:
Robinson-Foulds;false negative;statistical consistency;maximum likelihood;Bayesian;phylogenetics;false positive
DOI:
doi:10.5061/dryad.65tn4
摘要:
clades. We find that although true coalescence times are more ancient than speciation times under the multispecies coalescent model, estimated coalescence
Data from: Analysis of phylogenetic relationships and genome size evolution of the Amaranthus genus using GBS indicates the ancestors of an ancient
负责人:
Stetter, Markus G
关键词:
Amaranth genotyping by sequencing multispecies coalescent flow cytometry
DOI:
doi:10.5061/dryad.1bv83
摘要:
tree calculated with the multispecies coalescent supported a previous taxonomic classification into three subgenera although the subgenus A. Acnida consists
Data from: Analysis of a rapid evolutionary radiation using ultraconserved elements (UCEs): Evidence for a bias in some multi-species coalescent
负责人:
关键词:
Total Evidence;polytomy;Triplec;supermatrix rooted triplets;Galliformes;Phasianidae;gene tree estimation error;supermatrix rooted triples
DOI:
doi:10.5061/dryad.p1m52
摘要:
ny systematists believe that it will be necessary to collect data by next-generation sequencing (NGS) and use multispecies coalescent (“species tree”) methods
Data from: Sex-biased dispersal obscures species boundaries in integrative species delimitation approaches
负责人:
关键词:
Multispecies coalescent;Nuclear DNA;Mitochondrial DNA;Pachypus;Integrative species delimitation;sex-biased dispersal;Morphometrics;deep mitochondrial coalescence
DOI:
doi:10.5061/dryad.g97d432
摘要:
, statistical parsimony, trinomial distribution of triplets model [tr2]) and validation (STACEY, iBPP) approaches to species delimitation in the sc
Data from: A phylogenomic perspective on the biogeography of skinks in the Plestiodon brevirostris group inferred from target enrichment
负责人:
关键词:
Plestiodon;ancestral area;Miocene;Pliocene;phylogenomics;phylogeography;Pleistocene
DOI:
doi:10.5061/dryad.21j0n
摘要:
and multispecies coalescent phylogenetic approaches. We used these phylogenies to reconstruct ancestral geographic distributions. Results: The final dataset contained 3,282
Data from: Phylogeny and biogeography of the Amazonian Pachyptera (Bignonieae, Bignoniaceae)
负责人:
关键词:
Ancestral area reconstructions;coalescent approaches;haplotype networks;neotropics;species delimitation
DOI:
doi:10.5061/dryad.p8cz8w9kq
摘要:
. Morphological data supported the recognition of four of the five potential species suggested by GMYC, all of which were also supported by a multispecies coalescent
Data from: Phylogenetics support an ancient common origin of two scientific icons: Devils Hole and Devils Hole pupfish
负责人:
关键词:
ABBA-BABA;Cyprinodon diabolis;multi-species coalescent;divergence estimates;SNP assays;critically endangered;Cyprinodon nevadensis mionectes;Cyprinodon radiosus;RAD sequencing
DOI:
doi:10.5061/dryad.2bm21
摘要:
genomic subsets and evaluated four historical scenarios using the multispecies coalescent. Our results provide substantial information regardin

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