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Data from: CRISPR-based herd immunity limits phage epidemics in bacterial populations
负责人:
关键词:
herd immunity;T7;T7 phage;epidemic;Escherichia coli;spatial population structure;spatially structured populations
DOI:
doi:10.5061/dryad.42n44
摘要:
e we experimentally demonstrate that herd immunity arises during phage epidemics in structured and unstructured Escherichia coli populations consisting of differ
Data from: Phase transitions in yeast and bacterial populations under stress
负责人:
关键词:
Phase transitions;Population Collapse;Saccharomyces cerevisiae;Escherichia coli;temperature stress;Salt stress
DOI:
doi:10.5061/dryad.5hqbzkh2k
摘要:
ved with the application of various antibiotics to Escherichia coli, with a variety of patterns of decreased growth in response to antibiotic stress bot
Data from: A quantitative test of population genetics using spatio-genetic patterns in bacterial colonies
负责人:
关键词:
Modeling: stochastic spatial;genetic drift;gene flow;Ecology: spatial;Modeling: spatial;Ecology: theoretical;Theory;Migration;Escherichia coli;Pseudomonas aeruginosa;population dynamics;Modeling: individual based
DOI:
doi:10.5061/dryad.3147q
摘要:
two bacterial species, the gut microbe Escherichia coli and the opportunistic pathogen Pseudomonas aeruginosa, and show that spatio-genetic patterns in colony
Data from: Parallelism in adaptive radiations of experimental Escherichia coli populations
负责人:
关键词:
repeatability;divergence;Escherichia coli;Niche partitioning;niche expansion;diversification;eco-evolutionary feedbacks
DOI:
doi:10.5061/dryad.1pf8t
摘要:
h the expansion into novel niches or through partitioning of an existing niche. To test how the mode of resource specialization affects the tempo and repeatabili
Data from:A method for estimating Hill function-based dynamic models of gene regulatory networks
负责人:
关键词:
gene regulatory networks;optimization;Escherichia coli;parameter estimation
DOI:
doi:10.5061/dryad.ht047
摘要:
olve the issue of under-determined problem. As a case study, we apply the proposed technique on the SOS response in Escherichia coli and compare the result
Data from: Adaptation, clonal interference, and frequency-dependent interactions in a long-term evolution experiment with Escherichia coli
负责人:
关键词:
asexual populations;Beneficial mutations;Experimental evolution;clonal interference;frequency-dependent selection
DOI:
doi:10.5061/dryad.3m00k
摘要:
Twelve replicate populations of Escherichia coli have been evolving in the laboratory for >25 years and 60,000 generations. We analyzed bacteria from
Data from: Resident microbial communities inhibit growth and antibiotic resistance evolution of Escherichia coli in human gut microbiome samples
负责人:
关键词:
DOI:
doi:10.5061/dryad.t1g1jwszq
摘要:
of?Escherichia coli. We found the resident microbial communities not only suppressed growth and colonization by focal?E. coli, they also prevented it from
Data from: Replaying evolution to test the cause of extinction of one ecotype in an experimentally evolved population
负责人:
关键词:
extinction;Escherichia coli;Experimental evolution;coexistence
DOI:
doi:10.5061/dryad.vf896
摘要:
In a long-term evolution experiment with Escherichia coli, bacteria in one of twelve populations evolved the ability to consume citrate, a pr
Data from: Associations among antibiotic and phage resistance phenotypes in natural and clinical Escherichia coli isolates
负责人:
关键词:
bacteriophages;Plasmids;Escherichia coli;antibiotic resistance;microbial ecology;Evolution
DOI:
doi:10.5061/dryad.gj318
摘要:
s and bacteriophages for 94 natural and clinical Escherichia coli isolates. We found several positive associations between resistance phenotypes across isolates
Food Safety Domain: Prevalence and concentration of Salmonella enterica, generic Escherichia coli (E. coli) and coliforms on fresh vegetables sold
负责人:
Vipham, Jessie
关键词:
DOI:
doi:10.7910/dvn/xlkytg
摘要:
tomatoes. Data was collected in January 2018 and June 2018. This dataset was collected through research of the project "Integrated Horticulture Lives

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