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Data from: Phylogenetic relationship among horseshoe crab species: effect of substitution models on phylogenetic analyses
负责人:
关键词:
RELL;Tachypleus gigas;substitution model;Tachypleus tridentatus;molecular phylogenetics;Carcinoscorpius rotundicauda;Limulus polyphemus
DOI:
doi:10.5061/dryad.551
摘要:
e morphological differentiation among horseshoe crab lineages has resulted in substantial controversy concerning the phylogenetic relationship among the extant species
Data from: Incomplete lineage sorting in mammalian phylogenomics
负责人:
关键词:
supertree;Coalescence;placental;phylogeny;exon
DOI:
doi:10.5061/dryad.1m3s2
摘要:
The impact of incomplete lineage sorting (ILS) on phylogenetic conflicts among genes, and the related issue of whether to account for ILS
Data from: Efficient detection of repeating sites to accelerate phylogenetic likelihood calculations
负责人:
关键词:
Algorithms;maximum likelihood;phylogenetics;phylogenetic likelihood function
DOI:
doi:10.5061/dryad.8f0c8
摘要:
The phylogenetic likelihood function is the major computational bottleneck in several applications of evolutionary biology suc
Data from: A framework phylogeny of the American oak clade based on sequenced RAD data
负责人:
关键词:
Expressed sequence tags (EST);Quercus;Next-generation sequencing;plant systematics;Fagaceae;restriction-site associated DNA;partitioned RAD;phylogenomics
DOI:
doi:10.5061/dryad.ts2hj
摘要:
whose crown age is estimated at 23–33 million years old. Using a recently developed analytical pipeline for RAD-Seq phylogenetics, we created
Data from: Phylogenetic relationships among members of the neotropical clade of Miliuseae (Annonaceae): generic non-monophyly of Desmopsis
负责人:
关键词:
Desmopsis;molecular phylogeny;Stenanona;systematics;Sapranthus;Tridimeris
DOI:
doi:10.5061/dryad.nt269
摘要:
The phylogenetic relationships among members of the Neotropical clade of Miliuseae were inferred using Bayesian inference, maximum likelihood
Data from: Phylogenetic utility of ycf1 in orchids: a plastid gene more variable than matK
负责人:
关键词:
Orchidaceae;nrITS;matK;phylogeny;molecular systematics;ycf1;Chloroplast
DOI:
doi:10.5061/dryad.q2s7h
摘要:
for phylogenetic analysis is determined by ease of amplification and sequencing, confidence of assessment in phylogenetic character alignment, and by variability across broad
Data from: Conflicting phylogenomic signals reveal a pattern of reticulate evolution in a recent high-Andean diversification (Asteraceae: Astereae
负责人:
关键词:
reticulate evolution;Astereae;Asteraceae;ddRAD;hybridization;rapid diversification;Diplostephium;introgression;phylogenomics;genome skimming
DOI:
doi:10.5061/dryad.cn74h
摘要:
ium indicate reticulate evolution as a main cause of phylogenetic incongruence. Our results add evidence for a major role of reticulate evolution in events
Data from: Current methods for automated filtering of multiple sequence alignments frequently worsen single-gene phylogenetic inference
负责人:
关键词:
phylogenetic inference;alignment trimming;multiple sequence alignment;alignment filtering;molecular phylogeny;phylogenetics;phylogeny
DOI:
doi:10.5061/dryad.pc5j0
摘要:
Phylogenetic inference is generally performed on the basis of multiple sequence alignments (MSA). Because errors in an alignment can lead to errors
Data from: ALG11 – a new variable DNA marker for sponge phylogeny: comparison of phylogenetic performances with the 18S rDNA and the COI gene
负责人:
Huchon, Dorothée
关键词:
ALG11 COI 18SrDNA molecular phylogeny saturation
DOI:
doi:10.5061/dryad.20617h5g
摘要:
Phylogenetic relationships within sponge classes are highly debated. The low phylogenetic signal observed with some current molecular data

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