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Data from: Weak phylogenetic signal in physiological traits of methane-oxidizing bacteria
负责人:
关键词:
Traits Phylogenomics Methane oxidation Modeling Horizontal gene transfer Microorganisms
DOI:
doi:10.5061/dryad.6f27f
摘要:
methane-oxidizing bacteria (MOB). We generated a comprehensive data set that included 30 MOB strains with quantitative physiological trait information. Phylogenetic trees wer
Data from: Molecular phylogenetics of desmognathine salamanders (Caudata: Plethodontidae): a reevaluation of evolution in ecology, life history
负责人:
关键词:
Ecology;salamanders;Mitochondrial DNA;ribosomal DNA;Desmognathinae;Life history;molecular phylogenetics
DOI:
doi:10.5061/dryad.763
摘要:
Phylogenetic relationships were reconstructed for salamanders of the plethodontid subfamily Desmognathinae to examine evolution of morpholog
Data from: Probabilistic graphical model representation in phylogenetics
负责人:
关键词:
tree plate;Inference;Statistical phylogenetics;Graphical Models;modularization;computation
DOI:
doi:10.5061/dryad.nt898
摘要:
Recent years have seen a rapid expansion of the model space explored in statistical phylogenetics, emphasizing the need for new approaches
Data from: Phylogenomic analyses support traditional relationships within Cnidaria
负责人:
关键词:
phylogenetics phylogenomics transcriptomics
DOI:
doi:10.5061/dryad.4b6d3
摘要:
and models of molecular evolution, as well as topology tests for alternative phylogenetic relationships, support the monophyly of Medusozoa, Anthozoa
Data from: The utility of cranial ontogeny for phylogenetic inference: a case study in crocodylians using geometric morphometrics
负责人:
关键词:
Mesozoic;Life History Evolution;Crocodylia;Amphibians & reptiles;Alligator;Gavialis;Comparative studies;Crocodylus;Cenozoic;Morphometrics;Tomistoma
DOI:
doi:10.5061/dryad.14fn1
摘要:
The degree to which the ontogeny of organisms could facilitate our understanding of phylogenetic relationships has long been a subject of contenti
Data from: Testing and quantifying phylogenetic signals and homoplasy in morphometric data
负责人:
关键词:
Procrustes superposition;shape;Drosophila;phylogeny;squared-change parsimony;Geometric morphometrics;Homoplasy;Drosophilidae
DOI:
doi:10.5061/dryad.38gr5821
摘要:
The relationship between morphometrics and phylogenetic analysis has long been controversial. Here we propose an approach that is based on mapping
Data from: Detection of implausible phylogenetic inferences using posterior predictive assessment of model fit
负责人:
关键词:
Simulation;Markov chain Monte Carlo;Bayesian;phylogenetic;Posterior Predictive Distribution;Sequence Evolution;model fit
DOI:
doi:10.5061/dryad.nc866
摘要:
Systematic phylogenetic error caused by the simplifying assumptions made in models of molecular evolution may be impossible to avoid enti
Data from: Reticulate evolutionary history and extensive introgression in mosquito species revealed by phylogenetic network analysis
负责人:
关键词:
Bioinfomatics/Phyloinfomatics Genomics/Proteomics Hybridization Insects Molecular Evolution Phylogenetic Theory and Methods
DOI:
doi:10.5061/dryad.tn47c
摘要:
d in the study, phylogenetic networks provide a more natural model to capture reticulate evolutionary histories. In this work, we reanalyse the Anopheles data usi
Data from: Phylogenomic analysis of BAC-end sequence libraries in Oryza (Poaceae)
负责人:
Cranston, Karen A.
关键词:
phylogenomics rice Oryza BAC-end sequencing missing data gene trees species trees
DOI:
doi:10.5061/dryad.1611
摘要:
Analyses of genome scale data sets are beginning to clarify the phylogenetic relationships of species with complex evolutionary histories. Broad
Data from: Phylogenetic measures of plant communities show long-term change and impacts of fire management in tallgrass prairie remnants
负责人:
关键词:
beta diversity;functional diversity;Fire management;alpha diversity;Ecological restoration;Environmental filtering;community assembly;temporal dynamics
DOI:
doi:10.5061/dryad.763v6
摘要:
onships and further development of user-friendly analytical tools are needed for phylogenetics to widely inform restoration and management. In some systems, targeti

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