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Data from: Late-glacial demographic expansion motivates a clock overhaul for population genetics
负责人:
关键词:
time-dependency;Calibration of Demographic Transition;Bayesian skyline plots;Expansion Dating;Two-Epoch Model;Molecular Calibration;Molecular Rate
DOI:
doi:10.5061/dryad.3q24t
摘要:
demographic calibrations are virtually non-existent in most species, older phylogenetic calibration points (>1 Ma) are commonly used, which overestimate
Data from: Utility of pooled sequencing for association mapping in non-model organisms
负责人:
关键词:
conservation genetics;Genomics\/Proteomics;Oncorhynchus tshawytscha;Evolution of Sex;Fish;Bioinfomatics\/Phyloinfomatics;Adaptation
DOI:
doi:10.5061/dryad.85q6j
摘要:
High density genome-wide sequencing increases the likelihood of discovering genes of major effect and genomic structural variation in organisms
Data from: Degenerate adaptor sequences for detecting PCR duplicates in reduced representation sequencing data improve genotype calling accuracy
负责人:
关键词:
Wasmannia auropunctata;Mixornis gularis;Next-generation sequencing;genotyping;Saccharomyces cervisiae;RAD-seq;methodology
DOI:
doi:10.5061/dryad.34dt1
摘要:
e position in the alignment. However, restriction enzymes target specific locations within the genome, causing reads to start in the same place, and maki
Data from: Ecological overlap and horizontal gene transfer in Staphylococcus aureus and Staphylococcus epidermidis
负责人:
关键词:
Ecology;recombination;Staphylococcus epidermidis;nosocomial infections;Evolution
DOI:
doi:10.5061/dryad.82jq4
摘要:
pan-genome approach and whole genome multilocus-sequence typing revealed that around half of the genome was shared between the species. Based
Data from: Environmental adaptation contributes to gene polymorphism across the Arabidopsis thaliana genome
负责人:
关键词:
Arabidopsis thaliana;genome-wide polymorphism;environment;Genetic Variation
DOI:
doi:10.5061/dryad.q9p4s
摘要:
t balancing selection among heterogeneous environments maintains genetic variation at ecologically important genes. Comparison of the gene ontology annotations shows tha
Data from: Asexual genome evolution in the apomictic Ranunculus auricomus complex: examining the effects of hybridization and mutation accumulation
负责人:
关键词:
Apomixis;SNPs;hybridization;Ranunculus auricomus;Ranunculus;poliploid
DOI:
doi:10.5061/dryad.nk151
摘要:
genes for which open reading frames (ORF) could be determined were analyzed for signatures of divergent versus stabilizing selection. A comparison bet
Data from: Divergent selection and drift shape the genomes of two avian sister species spanning a saline-freshwater ecotone
负责人:
关键词:
ecological speciation;Demography;reference genome;genomics;Ammospiza nelsoni;ecological divergence;Tidal marshes;Holocene;Ammospiza caudacutus;annotation;Adaptation
DOI:
doi:10.5061/dryad.54gb2m9
摘要:
is a central question in evolutionary biology. Comparison of the genomes of phylogenetically related taxa spanning a selective habitat gradient enables discovery
Data from: Impacts of salt stress on locomotor and transcriptomic responses in the intertidal gastropod Batillaria attramentaria
负责人:
关键词:
quantifying behavioral response;osmotic stress;salinity tolerance;Batillaria attramentaria;linear mixed-effect model;physiological response;Holocene
DOI:
doi:10.5061/dryad.455mv2m
摘要:
. In this study, we investigated the effects of salinity stress on behavior (movement distance) and patterns of gene expression (using RNA-seq) of the intertidal
Data from: Transcriptome-wide polymorphisms of red abalone (Haliotis rufescens) reveal patterns of gene flow and local adaptation
负责人:
关键词:
Genomics\/Proteomics;climate change;Natural Selection and Contemporary Evolution;Haliotis rufescens;molecular evolution;Invertebrates;Adaptation
DOI:
doi:10.5061/dryad.85p80
摘要:
ough BLAST annotation, 34 of which contained more than one outlier SNP. A large number of these genes are involved in biominerali
Data from: Remarkably divergent regions punctuate the genome assembly of the Caenorhabditis elegans Hawaiian strain CB4856
负责人:
关键词:
Caenorhabditis elegans;Evolution;genome assembly;variation
DOI:
doi:10.5061/dryad.1k8kq
摘要:
t will facilitate the molecular dissection of their phenotypic differences. Our work also emphasizes the importance of going beyond simple alignment of reads

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