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ole-genome comparative mapping utilising evolutionarily conserved DNA sequences"" data-category="" data-cropid="" data-dimen="" data-id="259A5B2C-B6B6-492D-834C-D41955585C5A"> Supporting data for "G-Anchor: a novel approach for whole-genome comparative mapping utilising evolutionarily conserved DNA sequences"
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- 关键词：
- Genome-Mapping Metabolomic Software Workflow whole-genome alignment sequence mapping sequencing anchoring highly conserved elements (hce) genome evolution
- DOI：
- doi:10.5524/100415
- 摘要：
- of sequence variants to studies of chromosome evolution. Animal genomes are large and complex, and whole genome alignment is a computationally intense process, requiring
Data from: Reconstructing phylogeny from reduced-representation genome sequencing data without assembly or alignment
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- DOI：
- doi:10.5061/dryad.r0hq0
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- netic reconstructions with whole genomes and are especially practical for non-model organisms; nonetheless, alignment-free methods have not been applied with reduced genome
Data from: Current methods for automated filtering of multiple sequence alignments frequently worsen single-gene phylogenetic inference
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- DOI：
- doi:10.5061/dryad.pc5j0
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- Phylogenetic inference is generally performed on the basis of multiple sequence alignments (MSA). Because errors in an alignment can lead to errors
Data from: Local molecular clocks in three nuclear genes: divergence times for rodents and other mammals and incompatibility among fossil calibrations.
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- DOI：
- doi:10.5061/dryad.8502
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- s. Using seven independent calibration points and a maximum-likelihood framework, we evaluated whether molecular and paleontological estimates of mammali
Data from: Genome-wide identification of microsatellites and transposable elements in the dromedary camel genome using whole genome sequencing data
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- DOI：
- doi:10.5061/dryad.10h185k
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- . Distribution pattern of DNA transposons in the genomes of dromedary, Bactrian, and cattle was similar in contrast with LINE, SINE, and long terminal repeat (LTR
Data from: Identification and analysis of novel salt responsive candidate gene based SSRs (cgSSRs) from rice (Oryza sativa L.)
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- 关键词：
- Microsatellite genic-SSR cgSSR salt tolerance salt responsive gene rice molecular diversity candidate gene rice genotype
- DOI：
- doi:10.5061/dryad.dj51c
- 摘要：
- nity stress worldwide. Marker assisted breeding is a rapid and efficient way to develop improved variety for salinity stress tolerance. Genomic microsatellite markers ar
Data from: Has gene expression neofunctionalization in the fire ant antennae contributed to queen discrimination behavior?
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- DOI：
- doi:10.5061/dryad.qn4d68k
- 摘要：
- of differential expression of key genes in their main sensory organ, the antennae. To identify such genes, we sequenced RNA from four replicates of pooled antennae from thr
Data from: Phylogenetic marker development for target enrichment from transcriptome and genome skim data: the pipeline and its appli
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- 关键词：
- Species tree;cytonuclear discordance;Target Enrichment;low-copy nuclear genes;Oxalis;genome skimming
- DOI：
- doi:10.5061/dryad.dn08t
- 摘要：
- to obtain LCN genes for southern African Oxalis (Oxalidaceae), a speciose plant lineage in the Greater Cape Floristic Region. This resulted in 1164 LCN genes
Data from: Fully automated sequence alignment methods are comparable to, and much faster than, traditional methods in large data sets: an examp
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- DOI：
- doi:10.5061/dryad.nc220
- 摘要：
- apidly evolving virus, to compare different alignment approaches. Using one data set comprised exclusively of whole genomes and a second that also included sequence
Data from: Construction of a virtual Mycobacterium tuberculosis consensus genome and its application to data from a next generation sequencer
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- 关键词：
- phylogenetic analysis;Mycobacterium tuberculosis;consensus sequence;virtual typing;SNP concatemer
- DOI：
- doi:10.5061/dryad.nq070
- 摘要：
- zed in concatemer-based phylogenetic analysis to determine their reliability relative to a phylogenetic tree based on whole genome alignment as the gold standard
