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Data from: Utility of pooled sequencing for association mapping in non-model organisms
- 负责人：
- DOI：
- doi:10.5061/dryad.85q6j
- 摘要：
- data in non-model organisms, we developed a pipeline called PoolParty and illustrate its effectiveness in genetic association mapping. Ali
Data from: Fluidigm2PURC: automated processing and haplotype inference for double-barcoded PCR amplicons
- 负责人：
- DOI：
- doi:10.5061/dryad.89k5k30
- 摘要：
- double?barcoded PCR amplicons. In combination with the program PURC (Pipeline for Untangling Reticulate Complexes), our scripts process raw FASTQ files
Data from: A cost-and-time effective procedure to develop SNP markers for multiple species: a support for community genetics
- 负责人：
- DOI：
- doi:10.5061/dryad.2b6b43k
- 摘要：
- (RAD?Seq) to retrieve SNP markers for 40 diverse species including plants, invertebrates, fish and mammals. We developed a Python?based pipeline
Data from: Development of highly reliable in silico SNP resource and genotyping assay from exome capture and sequencing: an example from black spruce
- 负责人：
- DOI：
- doi:10.5061/dryad.tr87v
- 摘要：
- capture in the genus Picea. A bioinformatics pipeline was developed including stringent criteria that helped detect a set of 97 075 highly reli
Data from: Reference-free transcriptome assembly in non-model animals from next generation sequencing data
- 负责人：
- Cahais, Vincent
- DOI：
- doi:10.5061/dryad.5g32f94b
- 摘要：
- population genomics in animals. A Galaxy pipeline implementing our best-performing assembling strategy is provided.
Data from: Phylogenetic marker development for target enrichment from transcriptome and genome skim data: the pipeline and its appli
- 负责人：
- 关键词：
- Species tree;cytonuclear discordance;Target Enrichment;low-copy nuclear genes;Oxalis;genome skimming
- DOI：
- doi:10.5061/dryad.dn08t
- 摘要：
- t to obtain LCN genes for southern African Oxalis (Oxalidaceae), a speciose plant lineage in the Greater Cape Floristic Region. This resulted in 1164 LCN gene
Data from: Parallel tagged amplicon sequencing of transcriptome-based genetic markers for Triturus newts with the Ion Torrent
- 负责人：
- DOI：
- doi:10.5061/dryad.36775
- 摘要：
- and sequenced on the Ion Torrent next-generation sequencing platform. A bioinformatics pipeline identifies the alleles and recodes these to a genotypic format. Ne
Data from: Intra-individual polymorphism in chloroplasts from NGS data: where does it come from and how to handle it?
- 负责人：
- DOI：
- doi:10.5061/dryad.31733
- 摘要：
- bioinformatics pipelines’ error rates for SNP and genotypes calling using SNPs identified in Sanger sequencing. Specific pipelines are adequate to deal with
Data from: Using viromes to predict novel immune proteins in non-model organisms
- 负责人：
- Quistad, Steven D.
- 关键词：
- Viruses evolution immunity coral comparative genomics Corals Model Organisms Immunology Genomics
- DOI：
- doi:10.5061/dryad.tb2p4
- 摘要：
- . This same pipeline was then applied to reef-building coral, a non-model organism that currently lacks traditional molecular tools like transgenic animals
Data from: Oscillatory signatures underlie growth regimes in Arabidopsis pollen tubes: computational methods to estimate tip location, pe
- 负责人：
- DOI：
- doi:10.5061/dryad.6806c
- 摘要：
- n-source computational methods and original algorithms were integrated into an automated analysis pipeline that we employed to characterize spe
