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Data from: A MinION??based pipeline for fast and cost?effective DNA barcoding
负责人:
关键词:
Environmental DNA;systematics
DOI:
doi:10.5061/dryad.1s37q
摘要:
laboratory, is time-consuming, and/or expensive. We here address these issues by developing a barcoding pipeline for Oxford Nanopore MinION? and demonstrate
Data from: Trends in anesthesiology research: a machine learning approach to theme discovery and summarization
负责人:
关键词:
Natural Language Processing;Data Visualization;Machine Learning;Topic Modeling
DOI:
doi:10.5061/dryad.h86746g
摘要:
of thematic trends, and network mapping for visualization of thematic relations. We then apply this pipeline to a collection of anesthesiology abstracts. Res
Data from: Testing pipelines for genome-wide SNP calling from Genotyping-By-Sequencing (GBS) data for Pinus ponderosa
负责人:
关键词:
pipeline;reference-based;SNP;Pinus ponderosa;de novo;now;GBS
DOI:
doi:10.5061/dryad.6fv8fb4
摘要:
pipelines two of which require a reference genome (TASSEL-GBS V2 and Stacks), two of which are de novo pipelines (UNEAK and Stacks). Using Illumina
Data from: Marker development for phylogenomics: the case of Orobanchaceae, a plant family with contrasting nutritional modes
负责人:
关键词:
bioinformatic pipeline;Target Enrichment;Solanum lycopersicum;Erythranthe guttata;Orobanchaceae;marker development;single copy nuclear genes;phylogenomics
DOI:
doi:10.5061/dryad.7b86c
摘要:
pipelines. Here, we established a highly flexible bioinformatic pipeline, BaitsFinder, to identify putative orthologous single copy genes (SCGs
Data from: The QRS (Quantification of Representative Sequences) pipeline for amplicon sequencing: case study on within-population ITS1
负责人:
关键词:
cloning\/sanger sequencing;ITS1 region;Caullerya mesnili;Amplicon Sequencing
DOI:
doi:10.5061/dryad.v7f7r
摘要:
w bioinformatic pipeline (QRS) that pools similar sequence variants and estimates their frequencies in NGS data sets from populations or communities. We tested
Data from: Supportive wind conditions influence offshore movements of Atlantic Coast piping plovers (Charadrius melodus melodus) duri
负责人:
关键词:
DOI:
doi:10.5061/dryad.ghx3ffbkf
摘要:
flights,?Piping?Plovers?flew at estimated mean speeds of 42 km/hr and altitudes of 288 m (range of model uncertainty: 36 – 1,031 m). This study provides ne
Data from: A versatile pipeline for the multi-scale digital reconstruction and quantitative analysis of 3D tissue architecture
负责人:
关键词:
computational biology;mouse;liver tissue;3D tissue geometrical model;image analysis
DOI:
doi:10.5061/dryad.m67r6
摘要:
on images of markers covering multiple scales. Here, we designed a flexible pipeline for the multi-scale reconstruction and quantitative
Data from: Novel R pipeline for analyzing Biolog phenotypic microarray data
负责人:
关键词:
phenotypic microarray;Yersinia enterocolitica;Biolog
DOI:
doi:10.5061/dryad.r98g7
摘要:
pipeline to analyze phenotypic microarray data with novel procedures for grouping, normalization and effect identification. Grouping and normalization ar
Data from: Reconstruction of velocity fields in electromagnetic flow tomography
负责人:
关键词:
computer modelling and simulation;mathematical modelling;multi-electrode electromagnetic flow meter;electromagnetism;inverse problems;computational physics;finite-element method;flow tomography;potential distribution;velocity field reconstruction
DOI:
doi:10.5061/dryad.q2102
摘要:
cross section. Different asymmetric velocity fields encountered near pipe elbows, solids-in-water flows in inclined pipes and in stratified or multiphase flows ar
Data from: Single nucleotide polymorphism discovery via genotyping by sequencing to assess population genetic structure and r
负责人:
关键词:
genotyping by sequencing;population genetics;Andropogon gerardii;polyploidy;UNEAK;Poaceae;big bluestem;tallgrass prairie
DOI:
doi:10.5061/dryad.05qs7
摘要:
calling were used: the reference-free UNEAK pipeline and a reference-guided approach based on the sequenced Sorghum bicolor genome. SNPs generated usi

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