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Data from: Species tree estimation of North American chorus frogs (Hylidae: Pseudacris) with parallel tagged amplicon sequencing
负责人:
关键词:
reduced representation library;Pseudacris;anonymous nuclear locus;phylogenetics;targeted amplicon sequencing;high-throughput sequencing
DOI:
doi:10.5061/dryad.23rc0
摘要:
ve use of this technology for phylogenetic studies, which often include a relatively small portion of the genome but several taxa, requires strategies for genome partiti
Data from: Phylogeny with introgression in Habronattus jumping spiders (Araneae: Salticidae)
负责人:
关键词:
incomplete lineage sorting;Habronattus;Harmochirina;transcriptome;Plexippini;phylogeny;hybridization;introgression;introgression;incomplete lineage sorting;Salticidae;phylogeny;Salticinae;Jumping spiders
DOI:
doi:10.5061/dryad.5kg33
摘要:
tree discordance, we assembled transcriptomes for 34 Habronattus species and 2 outgroups. The concatenated 2.41 Mb of nuclear data (1877 loci) resolved phylogeny
Data from: Genomic evidence of gene flow during reinforcement in Texas Phlox
负责人:
关键词:
phylogenetic network;Phlox roemeriana;Phlox;transcriptome;reinforcement;introgression;Phlox pilosa;Phlox cuspidata;Phlox drummondii
DOI:
doi:10.5061/dryad.r25s5
摘要:
to determine the phylogenetic relationships between these species, and find extensive discordance among gene tree topologies across genes. We find evidence
Data from: The pipid root
负责人:
关键词:
Xenopus;Species tree;Coalescence;Gene tree;lineage sorting;high throughout sequencing;pipid;Pipidae
DOI:
doi:10.5061/dryad.66mc094q
摘要:
ult, however, when internodes are short and old, when genealogical discordance is common due to large ancestral effective population sizes or ance
Data from: Extensive gene tree discordance and hemiplasy shaped the genomes of North American columnar cacti
负责人:
关键词:
Cactaceae;hemiplasy;Lophocereus schottii;lineage sorting;Pereskia humboldtii;Carnegiea gigantea;Pachycereus pringlei;Stenocereus thurberi
DOI:
doi:10.5061/dryad.72c2g
摘要:
alignments. Species tree inference consistently returned the same phylogeny, but gene tree discordance was high: 37% of gene trees having at least 90
Data from: HiMAP: robust phylogenomics from highly multiplexed amplicon sequencing
负责人:
关键词:
multiplex PCR;systematics;Tephritidae;phylogenetics;Amplicon Sequencing;phylogenomics
DOI:
doi:10.5061/dryad.6524f
摘要:
phylogenetically informative characters, and although some discordance was observed between analyses, it provided unparalleled resolution of ma
Data from: Species tree reconstruction of a poorly resolved clade of salamanders (Ambystomatidae) using multiple nuclear loci
负责人:
关键词:
Bayesian;Ambystoma;Gene tree;coalescent;Species tree
DOI:
doi:10.5061/dryad.2gq14
摘要:
The analysis of diverse data sets can yield different phylogenetic estimates that challenge systematists to explain the source of discordance
Data from: Interrogating genomic-scale data for Squamata (lizards, snakes, and amphisbaenians) shows no support for key traditional morphological relationships
负责人:
关键词:
neural network;lizards;genomics;phylogeny;Gene Interrogation;Snakes
DOI:
doi:10.5061/dryad.sm6jb0p
摘要:
Genomics is narrowing uncertainty in the phylogenetic structure for many amniote groups. For one of the most diverse and species-rich groups
Data from: Do macrophylogenies yield stable macroevolutionary inferences? An example from squamate reptiles
负责人:
关键词:
time-calibration;Macroevolution;Squamata;macrophylogeny;squamates;Australia
DOI:
doi:10.5061/dryad.60js5
摘要:
Advances in the generation, retrieval, and analysis of phylogenetic data have enabled researchers to create phylogenies that contain many thousands

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