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Data from: Concatenation and concordance in the reconstruction of mouse lemur phylogeny: an empirical demonstration of the effect of allele sampling
负责人:
关键词:
lemur;phylogenetic analysis;Concatenation;Mirza;Microcebus;Gene tree;allele;Phaner;Allocebus;concordance
DOI:
doi:10.5061/dryad.3mt58823
摘要:
mechanisms have been proposed to generate discordance, including differential selection, long-branch attraction, gene duplication, genetic
Data from: Phylogenomics provides new insight into evolutionary relationships and genealogical discordance in the reef-building coral genus Acropora
负责人:
关键词:
control region;Acropora;spawning;Temporal reproductive isolation;PaxC;phylogeny;speciation
DOI:
doi:10.5061/dryad.831g1
摘要:
ons, genealogical discordance may reveal genes and genomic regions that contribute to the speciation process. Previous work has shown that conspecific colonies
Data from: Phylogenomics of horned lizards (genus: Phrynosoma) using targeted sequence capture data
负责人:
关键词:
Species tree;Concatenation;ultraconserved elements;phylogeny;SVD quartets;Phrynosomatidae;systematics;coalescent;Phrynosoma
DOI:
doi:10.5061/dryad.82p92
摘要:
esidual traces of hybridization. Concatenation and coalescent-based species tree phylogenetic analyses of these new TSC data support the same topolog
Data from: A RAD-sequencing approach to genome-wide marker discovery, genotyping, and phylogenetic inference in a diverse radiation of primates
负责人:
关键词:
double-digest RAD sequencing;reduced representation sequencing;non-model taxa;phylogenetics;New World primates;SNP markers;20-25 mya;Platyrrhini;restriction enzyme digests
DOI:
doi:10.5061/dryad.85jn3
摘要:
ons for phylogenetic discordance, including introgression. Our study additionally provides one of the first applications of next-generation sequencing methods
Data from: Ongoing hybridization obscures phylogenetic relationships in the Drosophila subquinaria species complex
负责人:
关键词:
incomplete lineage sorting;Drosophila recens;Drosophila subquinaria;Drosophila transversa;reproductive isolation;speciation
DOI:
doi:10.5061/dryad.026np03
摘要:
t both incomplete lineage sorting and gene flow are causing phylogenetic discordance. We suggest that ongoing gene flow primarily from D. recens int
Data from: Phylogenomic analyses reveal a deep history of hybridization and polyploidy in the Neotropical genus Lachemilla (Rosaceae)
负责人:
关键词:
gene flow;polyploidy;cytonuclear discordance;Rosaceae;Lachemilla;hybridization;species trees;introgression;phylogenetic networks
DOI:
doi:10.5061/dryad.vj2s888
摘要:
for phylogenetic reconstruction. Here, we use sequence capture data and multiple species tree and species network approaches to resolve the backbone phylogeny of the Neotropic
Data from: Coalescent species delimitation in milksnakes (genus Lampropeltis) and impacts on phylogenetic comparative analyses
负责人:
关键词:
gene-tree\/species-tree discordance;Divergence-time estimation;mtDNA introgression;Pleistocene diversification;Lampropeltis;Lampropeltini;Diversification rates
DOI:
doi:10.5061/dryad.420h7
摘要:
of gene-tree discordance on evolutionary analyses has been examined previously, the effect of unsampled and cryptic diversity has not. Here, we examine
Data from: Validity of the Diplostomoidea and Diplostomida (Digenea, Platyhelminthes) upheld in phylogenomic analysis
负责人:
关键词:
metacercaria;Diplostomoidea;Platyhelminthes;Strigeida;Hysteromorpha;Diplostomida;Cotylurus;Holocene;Nuclear-mitochondrial discordance;Alaria;phylogenomics
DOI:
doi:10.5061/dryad.7kj7t1q
摘要:
nome phylogeny, but supported in the UCE phylogeny. We speculate this mitonuclear discordance is related to ancient, rapid radiation in the Digenea. Both UCE
Data from: Phylogenetic marker development for target enrichment from transcriptome and genome skim data: the pipeline and its applicati
负责人:
关键词:
Species tree;cytonuclear discordance;Target Enrichment;low-copy nuclear genes;Oxalis;genome skimming
DOI:
doi:10.5061/dryad.dn08t
摘要:
ry robust, as retrieved through various gene and species tree reconstruction methods as well as concatenation. Cytonuclear discordance was strong. This indic
Data from: Examination of hemiplasy, homoplasy and phylogenetic discordance in chromosomal evolution of the Bovidae
负责人:
关键词:
hemiplasy;chromosomes;lineage sorting;Evolution;systematics;hybridization;Cenozoic;Bovidae;Homoplasy
DOI:
doi:10.5061/dryad.8332
摘要:
(resulting from secondary contact among taxa), processes that can potentially lead to phylogenetic discordance. We conclude that the most probable

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