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Data from: Phylogenetic tree estimation with and without alignment: new distance methods and benchmarking
负责人:
关键词:
Pair hidden Markov models;phylogenetic inference;Alignment free;Distance-based phylogenetics;statistical alignment
DOI:
doi:10.5061/dryad.n5r49
摘要:
a single alignment. We then use simulations to benchmark its performance against a wide-range of other phylogenetic tree inference methods, including the fir
Data from: Coestimating reticulate phylogenies and gene trees from multilocus sequence data
负责人:
Nakhleh, Luay
关键词:
Multispecies network coalescent reticulation incomplete lineage sorting phylogenetic network Bayesian inference RJMCMC
DOI:
doi:10.5061/dryad.3h185
摘要:
inference methods, on the other hand, underestimate divergence times and overestimate coalescence times when the evolutionary history is reticulate. While the MSNC
Data from: Placing cryptic, recently extinct, or hypothesized taxa into an ultrametric phylogeny using continuous character data: A case study
负责人:
关键词:
Macroevolution;Anolis roosevelti;extinction;Morphological Evolution;phylogenetics;Anolis;Polychrotidae;Models\/Simulations
DOI:
doi:10.5061/dryad.1st98
摘要:
In recent years, enormous effort and investment has been put into assembling the tree of life: a phylogenetic history for all species on Ear
Data from: A simple approach for maximizing the overlap of phylogenetic and comparative data
负责人:
关键词:
data imputation;Embryophyta;phylogenetic comparative method;taxonomy;missing data
DOI:
doi:10.5061/dryad.5d3rq
摘要:
Biologists are increasingly using curated, public data sets to conduct phylogenetic comparative analyses. Unfortunately, there is often a mismatch
Data from: Flow cytometric methods for indirect analysis and quantification of gametogenesis in Chlamydomonas reinhardtii (Chlorophyceae)
负责人:
关键词:
Flow cytometry;Gametogenesis;Chlamydomonas reinhardtii;Evolutionary Biology;Phycology
DOI:
doi:10.5061/dryad.57j1t
摘要:
efficiency in the quantification of gametogenesis, as a method of comparing the switch between vegetative and gametic states across treatments, and as criteria
Data from: The summary-likelihood method and its implementation in the Infusion package
负责人:
关键词:
phylogeography;Bioinfomatics\/Phyloinfomatics;Population Genetics - Empirical;population dynamics
DOI:
doi:10.5061/dryad.4gh7b
摘要:
the method, in particular for a scenario of inference of population-size change from genetic data. We show that the method provides confidence intervals
Data from: Character Analysis in Morphological Phylogenetics: Problems and Solutions
负责人:
关键词:
morphology;phylogenetics;Quantitative Characters;weighting;character coding
DOI:
doi:10.5061/dryad.671
摘要:
ible solutions are described. The new coding method is applied to data from hoplocercid lizards, and the results show the sensitivity of phylogenetic conclusions
Data from: A tale of two phylogenies: comparative analyses of ecological interactions
负责人:
关键词:
Ecology: evolutionary;Macroevolution;Community: structure;Evolution: host\/parasite;Ecology: statistical;Interactions: host\/parasite;phylogeny;Coevolution;statistics
DOI:
doi:10.5061/dryad.jf3tj
摘要:
harbored by hosts were found to dominate. We go on to show that in situations where these additional phylogenetic effects exist, then previous methods hav
Data from: Genetic assignment with isotopes and habitat suitability (GAIAH), a migratory bird case study
负责人:
Ruegg, Kristen
关键词:
Migratory Connectivity Population Assignment Avian Ecology Wilson's warbler Movement Ecology
DOI:
doi:10.5061/dryad.sv8n7
摘要:
, we develop a method for combining inferences from high-resolution genetic markers, stable isotopes, and habitat suitability models, to spatially infer
Data from: Disentangling the effects of geographic and ecological isolation on genetic differentiation
负责人:
关键词:
Isolation by ecology;spatial genetics;isolation by distance;Zea mays;Landscape Genetics;Homo Sapiens;isolation by environment;partial Mantel test
DOI:
doi:10.5061/dryad.24kp5
摘要:
of successful migration. Empirical studies often seek to investigate the relationship between genetic differentiation and some ecological var

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