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Data from: A new Bayesian method for fitting evolutionary models to comparative data with intraspecific variation
负责人:
关键词:
Morphological Evolution;phylogenetics;Cyprinidae;Models\/Simulations
DOI:
doi:10.5061/dryad.7fv08k72
摘要:
Phylogenetic comparative methods that incorporate intraspecific variability are relatively new and, so far, not especially widely use
Data from: The evolution of energetic scaling across the vertebrate tree of life
负责人:
Uyeda, Josef Christensen
关键词:
Allometry Energetics Macroecology Macroevolution Phylogenetics: comparative Phylogenetics: methods Physiology: comparative Vertebrates
DOI:
doi:10.5061/dryad.3c6d2
摘要:
l phylogenetic comparative method to investigate how often and in which clades the macroevolutionary dynamics of the metabolic scaling have changed. We find strong evidence tha
Data from: Effects of phylogenetic reconstruction method on the robustness of species delimitation using single-locus data
负责人:
关键词:
species delimitation;Metabarcoding;Drosophila;DNA Barcoding;PTP;speciation;coalescent;GMYC;OTU;Lepidoptera;molecular dating;Cypraeidae;NGS;rotifera
DOI:
doi:10.5061/dryad.8rv46
摘要:
iable diversity estimates are, in terms of richness and identity, with respect to species delimitation, phylogenetic and smoothing methods. 3. The PTP method gene
Data from: Estimating exotic gene flow into native pine stands: zygotic versus gametic components
负责人:
关键词:
gene flow;Pinus pinaster;migration rate;Scots pine;genotypes;Pinus sylvestris;introgression;genetic monitoring;microsatellites;haplotypes;Genetic assignment;Chloroplast;exotic plantation;seed and pollen dispersal;migration rates;Maritime pine
DOI:
doi:10.5061/dryad.pq6hg
摘要:
itly distinguished: zygotic, male gametic and female gametic. Building on a previous model for estimating contemporary rates of zygotic and male gametic gene flow amo
Data from: An improved hypergeometric probability method for identification of functionally linked proteins using phylogenetic profiles
负责人:
关键词:
Protein function prediction;functional similarity;phylogenetic profiles;functional annotation
DOI:
doi:10.5061/dryad.m6t4j
摘要:
y history of proteins encoded in genomes. Here we propose an improved phylogenetic profile-based method which considers the co-evolution of the reference genome
Data from: Phylogenetic comparative methods on phylogenetic networks with reticulations
负责人:
关键词:
phylogenetic comparative methods;PhyloNetworks;Xiphophorus;phylogenetic networks;Transgressive Evolution;heterosis
DOI:
doi:10.5061/dryad.nt2g6
摘要:
The goal of Phylogenetic Comparative Methods (PCMs) is to study the distribution of quantitative traits among related species. The observed traits ar
Data from: Allele phasing has minimal impact on phylogenetic reconstruction from targeted nuclear gene sequences in a case study of Artocarpus
负责人:
关键词:
Artocarpus;incomplete lineage sorting;Target Enrichment;phylogenetics;allele phasing;HybSeq;alleles
DOI:
doi:10.5061/dryad.r8q72
摘要:
heterozygosity in phylogenetic studies and present a novel method for assembling allele sequences from target enriched Illumina sequencing libraries. Met
Data from: Testing for independence between evolutionary processes
负责人:
关键词:
Statistical test;phylogeny;Coevolution
DOI:
doi:10.5061/dryad.847vk
摘要:
e evolutionary events are associated on a phylogenetic tree. The method is applicable to any discrete character, like substitutions within a coding sequence
Data from: Phylogenetic ANOVA: group-clade aggregation, biological challenges, and a refined permutation procedure
负责人:
关键词:
Macroevolution;Morphological Evolution;Plethodon;multivariate data;phylogenetic comparative methods
DOI:
doi:10.5061/dryad.2s8d0f9
摘要:
comparative methods where one or a few transitions in discrete traits are observed on the phylogeny. Finally, we recommend that phylogenetic comparati
Data from: EPA-ng: massively parallel evolutionary placement of genetic sequences
负责人:
关键词:
Metabarcoding;phylogenetic placement;metagenomics;phylogenetics;microbiome
DOI:
doi:10.5061/dryad.kb505nc
摘要:
how these sequences fit into anevolutionary context. Previous implementations of phylogenetic placement algorithms, such as the Evolutionar

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