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Data from: Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees
- 负责人：
- DOI：
- doi:10.5061/dryad.7881
- 摘要：
- gene duplications and losses. Gene tree parsimony is a phylogenetic optimization criterion in which a species tree is selected that minimizes the number of gene duplicati
Data from: Assessing combinability of phylogenomic data using Bayes Factors
- 负责人：
- DOI：
- doi:10.5061/dryad.gt81779
- 摘要：
- events among genes (simulated within a species tree), and compare the results with our recently-described phylogenetic informational dissonance
Data from: Phylogenomics of horned lizards (genus: Phrynosoma) using targeted sequence capture data
- 负责人：
- DOI：
- doi:10.5061/dryad.82p92
- 摘要：
- esidual traces of hybridization. Concatenation and coalescent-based species tree phylogenetic analyses of these new TSC data support the same topolog
Data from: ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data
- 负责人：
- DOI：
- doi:10.5061/dryad.v15v0
- 摘要：
- We present an r package, ggtree, which provides programmable visualization and annotation of phylogenetic trees. ggtree can read more tree
Data from: Phylogenetic tree estimation with and without alignment: new distance methods and benchmarking
- 负责人：
- DOI：
- doi:10.5061/dryad.n5r49
- 摘要：
- Phylogenetic tree inference is a critical component of many systematic and evolutionary studies. The majority of these studies are based
Data from: Tree imbalance causes a bias in phylogenetic estimation of evolutionary timescales using heterochronous sequences
- 负责人：
- DOI：
- doi:10.5061/dryad.q4545
- 摘要：
- observed in phylogenetic trees, can lead to reduced accuracy or precision of phylogenetic timescale estimates. We analysed simulated data
Data from: The phylogeny of Rickettsia using different evolutionary signatures: how tree-like is bacterial evolution?
- 负责人：
- 关键词：
- genome reduction;reticulate evolution;convergent evolution;Systematic error;Horizontal gene transfer
- DOI：
- doi:10.5061/dryad.6cn66
- 摘要：
- ween phylogenetic reconstructions using different portions of the genome. Here, we reconstruct the Rickettsia phylogeny using whole-genome data, including two new genomes from pr
Data from: Reticulate evolutionary history and extensive introgression in mosquito species revealed by phylogenetic network analysis
- 负责人：
- 关键词：
- Bioinfomatics/Phyloinfomatics Genomics/Proteomics Hybridization Insects Molecular Evolution Phylogenetic Theory and Methods
- DOI：
- doi:10.5061/dryad.tn47c
- 摘要：
- d in the study, phylogenetic networks provide a more natural model to capture reticulate evolutionary histories. In this work, we reanalyse the Anopheles data usi
Data from: Detecting the anomaly zone in species trees and evidence for a misleading signal in higher-level skink phylogeny (Squamata: Scincidae)
- 负责人：
- DOI：
- doi:10.5061/dryad.sf6s9
- 摘要：
- al phylogenetic studies often employ coalescent-based species tree methods to avoid the anomaly zone, but to this point these studies have not had a method
Data from: Phylogenetic utility of ycf1 in orchids: a plastid gene more variable than matK
- 负责人：
- DOI：
- doi:10.5061/dryad.q2s7h
- 摘要：
- spacers. Analyses of a combination of these types of DNA regions yield phylogenetic structure at various levels of a tree (i.e., along the spine and at the ti
