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Data from: Sequence Capture using PCR-generated Probes (SCPP): a cost-effective method of targeted high-throughput sequencing for non-model organisms
- 负责人:
- DOI:
- doi:10.5061/dryad.rk204
- 摘要:
- netics and phylogenetics of non-model organisms. To multiplex large numbers of indexed samples while sequencing predominantly orthologous, targeted regions of the genome
Data from: A universal probe set for targeted sequencing of 353 nuclear genes from any flowering plant designed using k-medoids clustering
- 负责人:
- 关键词:
- Nuclear Genes;k-means clustering;Target Enrichment;HybSeq;Machine Learning;Angiosperms;phylogenomics
- DOI:
- doi:10.5061/dryad.s3h9r6j
- 摘要:
- Sequencing of target-enriched libraries is an efficient and cost-effective method for obtaining DNA sequence data from hundreds of nuclear loci
Data from: A protocol for targeted enrichment of intron-containing sequence markers for recent radiations: a phylogenomic example from Heuchera
- 负责人:
- DOI:
- doi:10.5061/dryad.4cn66
- 摘要:
- and mitochondrial genomes were used as references for off-target reads. The data were aligned and subjected to coalescent and concatenated phylogenetic analyse
Hymenopteran UCE sequences
- 负责人:
- BGI
- DOI:
- doi:10.26036/cnphis0001693
- 摘要:
- ng insects, a primary approach to collecting this class of data involves transcriptome sequencing, because few insects have high-quality genome sequences ava
Data from: Next-generation museum genomics: phylogenetic relationships among palpimanoid spiders using sequence capture techniques (Ar
- 负责人:
- DOI:
- doi:10.5061/dryad.387c58v
- 摘要:
- ent target capture sequencing techniques to sequence both Ultra-Conserved Elements (UCE) and exonic regions for lineages that span the modern spiders
Data from: Deep sequencing of a candidate region harboring the SOX9 gene for the canine XX disorder of sex development
- 负责人:
- Grzemski, Adrian
- DOI:
- doi:10.5061/dryad.65th7
- 摘要:
- harboring the SOX9 gene. We applied a genome-wide association study and targeted next-generation sequencing techniques to compare DSD and normal female
Data from: Microfluidic PCR-based target enrichment: a case study in two rapid radiations of Commiphora (Burseraceae) from Madagascar
- 负责人:
- DOI:
- doi:10.5061/dryad.591q3
- 摘要:
- to maximize sequencing depth efficiency. The principle benefit of microfluidic PCR over alternative target enrichment strategies is that it bypasses costly
Data from: Using transcriptome sequencing and pooled exome capture to study local adaptation in the giga-genome of Pinus cembra
- 负责人:
- DOI:
- doi:10.5061/dryad.4bb5849
- 摘要:
- of the closely related species Pinus sibirica; in both species, more than 70% of the targeted contigs were sequenced at a depth ? 40x (number of haplotypes in the pool). Howeve
Data from: Genomics of Compositae weeds: EST libraries, microarrays, and evidence of introgression
- 负责人:
- Grassa, Chris
- 关键词:
- ESTs hybridization introgression invasive plants microarray development next generation sequencing sequence assemblies transcriptome sequencing weeds
- DOI:
- doi:10.5061/dryad.cm7td
- 摘要:
- , we also analyze these genomic data for evidence of hybridization. METHODS: We generated 22 expressed sequence tag (EST) libraries for the 11 targeted weeds
Data from: Targeted re-sequencing of coding DNA sequences for SNP discovery in non-model species
- 负责人:
- DOI:
- doi:10.5061/dryad.3f4jr01
- 摘要:
- Targeted capture coupled with high throughput sequencing can be used to gain information about nuclear sequence variation at hundreds to thousands