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Data from: Overestimation of the adaptive substitution rate in fluctuating populations
- 负责人：
- DOI：
- doi:10.5061/dryad.85qb2r1
- 摘要：
- Estimating the proportion of adaptive substitutions (?) is of primary importance to uncover the determinants of adaptation in comparative genomic
Data from: Phylogenetic informativeness reconciles ray-finned fish molecular divergence times
- 负责人：
- DOI：
- doi:10.5061/dryad.3rq51
- 摘要：
- ross the Tree of Life. This discordance is attributed to a variety of variables including calibration age uncertainty, calibration placement, nucleotide substitution rate hete
Data from: Inferring heterogeneous evolutionary processes through time: from sequence substitution to phylogeography
- 负责人：
- DOI：
- doi:10.5061/dryad.qp747
- 摘要：
- simal substitution rate matrices across different time intervals, called epochs, along the evolutionary history. We focus on an epoch model implementati
Data from: Genetic distance for a general non-stationary Markov substitution process
- 负责人：
- DOI：
- doi:10.5061/dryad.g7g0n
- 摘要：
- on, existence of a molecular clock, and phylogenetic inference. Under the class of continuous-time substitution models, the distance is commonly defined
Data from: Coalescent versus concatenation methods and the placement of Amborella as sister to water lilies
- 负责人：
- DOI：
- doi:10.5061/dryad.qb251
- 摘要：
- of Amborella with branch lengths and substitution model parameters estimated from each of the 310 nuclear genes, and ii) three hypothetical species trees that ar
Data from: Ecology has contrasting effects on genetic variation within species versus rates of molecular evolution across species in water beetles
- 负责人：
- DOI：
- doi:10.5061/dryad.926pq
- 摘要：
- s substitution rates across species depended mainly on habitat types, and running water specialists had the highest rate. These results are consiste
Data from: Kakusan4 and Aminosan: two programs for comparing nonpartitioned, proportional, and separate models for combined molecular
- 负责人：
- DOI：
- doi:10.5061/dryad.8646
- 摘要：
- Proportional and separate models able to apply different combination of substitution rate matrix and among-site rate variation model to each locus ar
Data from: Reconstructing the phylogenetic history of long-term effective population size and life-history traits using patterns of amino acid
- 负责人：
- DOI：
- doi:10.5061/dryad.72594
- 摘要：
- r synonymous substitution rates (dN/dS), and potentially also the ratio of radical over conservative amino acid replacement rates (Kr/Kc), are negatively correlate
Data from: Neurospora and the dead-end hypothesis: genomic consequences of selfing in the model genus.
- 负责人：
- DOI：
- doi:10.5061/dryad.4n9b4
- 摘要：
- ng these negative effects, the nucleotide substitution rate and the spread of transposons is reduced in selfing species. We suggest that differences
Data from: The relationship of recombination rate, genome structure, and patterns of molecular evolution across angiosperms
- 负责人：
- DOI：
- doi:10.5061/dryad.10nh8
- 摘要：
- on of duplicate genes or expansion of gene families. An analysis of the correlation between the ratio of nonsynonymous to synonymous substitution rates (dN/dS) and recombination rate
