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Data from: Gene tree discordance causes apparent substitution rate variation
负责人:
关键词:
Substitution rates;hemiplasy;gene tree discordance;incomplete lineage sorting
DOI:
doi:10.5061/dryad.17k8j
摘要:
ider another source of substitution rate variation due to a technical bias associated with gene tree discordance. Discordance has been found to be ra
Data from: Exploring the relationships between mutation rates, life history, genome size, environment and species richness in flowering plants
负责人:
关键词:
Evolution: molecular;Macroevolution
DOI:
doi:10.5061/dryad.31614
摘要:
ng hypotheses. By analyzing sequences from 130 families of angiosperms, we show that variation in the synonymous substitution rate is correlated among genes from
Data from: Elevated substitution rate estimates from ancient DNA: model violation and bias of Bayesian methods
负责人:
关键词:
Demography;Bayesian;ancient DNA;mutation rate;coalescent simulation;heterochronous sequences
DOI:
doi:10.5061/dryad.1355
摘要:
for the estimation of substitution rates and divergence dates as an alternative to fossil and geological calibration. This comes at a time of growing inte
Data from: Sequence entropy of folding and the absolute rate of amino acid substitutions
负责人:
关键词:
protein evolution;epistasis;Coevolution;substitution rate;Contingency;transition state theory;statistical mechanics;evolutionary Stokes shift;entrenchment
DOI:
doi:10.5061/dryad.7b8vb
摘要:
e. However, epistatic interactions among sites in a protein result in hererogeneities in the substitution rate, both temporal and spatial, that ar
Data from: Markov-modulated continuous-time Markov chains to identify site- and branch-specific evolutionary variation in BEAST
负责人:
关键词:
Markov-modulated models;heterotachy;BEAGLE;phylogenetics;Bayesian inference;covarion;BEAST
DOI:
doi:10.5061/dryad.230s5h0
摘要:
ll substitution rate) at individual sites to vary across lineages. We implement a general MMM framework in BEAST, a popular Bayesian phylogeneti
Data from: Grouping substitution types into different relaxed molecular clocks
负责人:
关键词:
DOI:
doi:10.5061/dryad.2ts15
摘要:
Different types of nucleotide substitutions experience different patterns of rate change over time. We propose clustering context-dependent
Data from: How to calculate the non--synonymous to synonymous rate ratio of protein-coding genes under the Fisher--Wright mutation--selecti
负责人:
关键词:
influenza;monocots;PB2;Chloroplast;influenza;non-synonymous to synonymous rate ratio;Evolution;adaptive evolution;rbcL
DOI:
doi:10.5061/dryad.3r3q4
摘要:
First principles of population genetics are used to obtain formulae relating the non-synonymous to synonymous substitution rate rati
Data from: Transcriptome sequencing reveals genome-wide variation in molecular evolutionary rate among ferns
负责人:
关键词:
vittarioid ferns;Pityrogramma;Parahemionitis;Adiantum;Vittaria;molecular evolution;Pteris;Notholaena;Argyrochosma;Gaga;nucleotide substitution rate;Cryptogramma;Myriopteris
DOI:
doi:10.5061/dryad.rg22j
摘要:
s reinforce recently reviewed mechanisms hypothesized to shape molecular evolutionary rates in vittarioid ferns and provide novel insight into substitution rate
Data from: The local-clock permutation test: a simple test to compare rates of molecular evolution on phylogenetic trees
负责人:
关键词:
molecular clock;substitution rate;likelihood ratio test;LCPT;mutation rate;LRT
DOI:
doi:10.5061/dryad.7886
摘要:
Rates of molecular evolution vary substantially between lineages, and a growing research effort is directed at uncovering the causes and consequences
Data from: Kinetic study of catalytic CO2 hydration by metal-substituted biomimetic carbonic anhydrase model complexes
负责人:
关键词:
DOI:
doi:10.5061/dryad.gn8723p
摘要:
because the substitution of bicarbonate with water (bicarbonate release) occurred easily.

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