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Data from: A set of plastid loci for use in multiplex fragment length genotyping for intraspecific variation in Pinus (Pinaceae)
负责人:
关键词:
Pinus resinosa;Pinus torreyana torreyana;Pinus taeda;Pinus albicaulis;discriminant analysis of principal components;Pinus cembroides;Pinus johannis;Pinus elliottii;Pinus heldreichii;Pinus rigida;Pinus massoniana;Pinus rzedowskii;Pinus ponderosa benthamiana;microsatellites;Pinus pseudostrobus var. apulcensis;Pinus bungeana;Pinus morrisonicola;Pinus chihuahuana;Pinus longaeva;Pinus Edulis;Pinus canariensis;Pinus leiophylla;Pinus attenuata;Pinus pinea;Pinus hartwegii subsp. donnell-smithii;Pinus montezumae;Pinus devoniana;Pinus lawsonii;Pinus pinaster;Pinus ponderosa var. benthamiana;Pinus douglasiana;Pinus yecorensis;plastid;Pinus arizonica;Pinus amamiana;Pinus pumila;Pinus kesiya;Pinus hartwegii;Pinus gerardiana;Pinus monticola;Pinus culminicola;Pinus muricata;Pinus sibirica;Pinus virginiana;Pinus oaxacana;Intraspecific Taxonomy;Pinus echinata;Pinus wallichiana;Pinus monophylla;Pinus serotina;Pinus densata;Pinus remota;Pinus caribea;Pinus squamata;Pinus dabeshanensis;Pinus strobus;Pinus pungens;Pinus taiwanensis;Pinus yunnanensis;Pinus clausa;Pinus koraiensis;Pinus pseudostrobus;Pinus nigra;Pinus densiflora;Pinus thunbergii;Pinus strobiformis;Pinus radiata;Pinus banksiana;Pinus dalatensis;Pinus jeffreyi;Pinus mugo;Pinus ponderosa scopulorum;Pinus palustris;Pinus ponderosa;Pinus glabra;Pinus ponderosa ponderosa;Pinus torreyana insularis;Pinus engelmannii;Pinus roxburghii;Pinus parviflora;Pinus tropicalis;Pinus cubensis;Pinus coulteri;Pinus lumholtzii;Pinus nelsonii;Pinus Krempfii;Pinus sabiniana;Pinus occidentalis;Pinus ponderos var. scopulorum;Pinus hwangshanensis;Pinus peuce;Pinus flexilis;Pinus contorta;Pinus sylvestris;Pinus ayacahuite;Pinus patula;Pinus pinceana;Pinus gregii;Pinus maximartinezii;Pinus quadrifolia;Pinus chiapensis;Pinus armandii;Pinus wangii;Pinus aristata;Pinus halepensis;Pinus cooperi;Pinus lambertiana;Pinus donnell smithii;Pinus pringlei;Pinus merkusii;Pinus brutia;Pinus discolor;Pinus latteri;Pinus fragilissima
DOI:
doi:10.5061/dryad.5nc25
摘要:
originally published for P. contorta and P. thunbergii. This allows selection of loci for single-tube PCR multiplexed genotyping in any subsection of the ge
Data from: The mouse universal genotyping array: from substrains to subspecies
负责人:
关键词:
Mus musculus;MUGA;SNP array;Mouse Universal Genotyping Array
DOI:
doi:10.5061/dryad.2p7ns
摘要:
Genotyping microarrays are an important resource for genetic mapping, population genetics, and monitoring of the genetic integrity of laboratory
Data from: High-throughput microsatellite genotyping in ecology: improved accuracy, efficiency, standardization and success with low-quantity
负责人:
关键词:
faecal DNA;Ursus arctos;individual identification;parentage analysis;high-throughput sequencing;short tandem repeat (STR)
DOI:
doi:10.5061/dryad.18tg7
摘要:
the continued use of microsatellites for certain applications. We present a study for improving microsatellite genotyping in ecology usi
Data from: Genotyping of Coxiella burnetii from domestic ruminants and human in Hungary: indication of various genotypes
负责人:
关键词:
2010-2013;phylogenetic tree;multi-locus variable-number tandem repeat analysis;multispacer sequence typing;alignment;Coxiella burnetii
DOI:
doi:10.5061/dryad.rc8q4
摘要:
, n?=?5 and human, n?=?1) collected from across Hungary were studied by a 10-loci multispacer sequence typing (MST) and 6-loci multiple-locus variable-numb
Data from: RAD sequencing, genotyping error estimation and de novo assembly optimization for population genetic inference
负责人:
关键词:
Berberis trifolia;Berberis pallida;Berberis moranensis;optimization;error rate;RADseq;Stacks;Berberis alpina;de novo Assembly;Miocene;replicates;Pleistocene
DOI:
doi:10.5061/dryad.g52m3
摘要:
and reporting of genotyping error rates. Here we use individual sample replicates, under the expectation of identical genotypes, to quantify
Data from: Genome assembly improvement and mapping convergently evolved skeletal traits in sticklebacks with genotyping-by-sequencing
负责人:
关键词:
genotyping-by-sequencing;convergent evolution;quantitative trait locus;stickleback;linkage map;Gasterosteus aculeatus
DOI:
doi:10.5061/dryad.q018v
摘要:
s, providing a powerful system to map the genetic architecture of evolved traits. Here, we developed and applied a binned genotyping-by-sequencing (GBS) method
Data from: Special features of RAD Sequencing data: implications for genotyping
负责人:
关键词:
Genomics\/Proteomics;Caenorhabditis elegans;Population Ecology;Bioinfomatics\/Phyloinfomatics;Ecological Genetics;Heliconius melpomene
DOI:
doi:10.5061/dryad.218p2
摘要:
RAD Sequencing (RAD-Seq) is an economical and efficient method for SNP discovery and genotyping. As with other sequencing-by-synthesis methods
Data from: Stepwise Threshold Clustering: a new method for genotyping MHC loci using next-generation sequencing technology
负责人:
关键词:
Major histocompatibility complex;Next-generation sequencing;MHC;pyrosequencing;Gasterosteus aculeatus
DOI:
doi:10.5061/dryad.4fn4g
摘要:
for high-throughput genotyping of multi-locus templates like MHC in non-model organisms. Previous approaches to genotyping MHC genes using NGS technologies
Data from: A call for more transparent reporting of error rates: the quality of AFLP data in ecological and evolutionary research
负责人:
关键词:
amplified fragment length polymorphsim (AFLP);population genetics;publishing standards;genotyping error rate;reproducibility;replicate samples
DOI:
doi:10.5061/dryad.47sd5
摘要:
Despite much discussion of the importance of quantifying and reporting genotyping error in molecular studies, it is still not standard practice
Data from: Testing pipelines for genome-wide SNP calling from Genotyping-By-Sequencing (GBS) data for Pinus ponderosa
负责人:
关键词:
pipeline;reference-based;SNP;Pinus ponderosa;de novo;now;GBS
DOI:
doi:10.5061/dryad.6fv8fb4
摘要:
t genomes and their amenability to high-throughput genotyping techniques. Genotyping-by-sequencing (GBS) has been demonstrated to be a robust and cost

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