Data from: An in silico comparison of protocols for dated phylogenomics

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关键词：

exon-capture;Primates;UCE;RADseq;phylogenomics

DOI：

doi:10.5061/dryad.8hs71

摘要：

sequence-enrichment using ultraconserved element and exon-capture probes, and restriction-site-associated DNA sequencing (RADseq and ddRADseq). Here we prese

Data from: Phylogenomic incongruence, hypothesis testing, and taxonomic sampling: the monophyly of characiform fishes

负责人：

关键词：

Concatenation;Exons;Otophysi;Multispecies coalescent methods;UCEs;Gene genealogy interrogation

DOI：

doi:10.5061/dryad.vb76b45

摘要：

w representative taxa is not a robust strategy to advance phylogenetic knowledge of recalcitrant groups. We leverage the expanded exon capture dataset generated her

Data from: A targeted next-generation sequencing toolkit for exon-based cichlid phylogenomics

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关键词：

Cichla temensis;Cichlinae;Reference sequences;Exons;\u2018Geophagus\u2019 brasiliensis;Andinoacara pulcher;Cichlidae;Paratilapia polleni;Heterochromis multidens;Oreochromis niloticus;Targeted next-generation sequencing;Etroplus suratensis;Neotropical cichlids;Crenicichla frenata;Herichthys cyanoguttatus;phylogenomics;Biotoecus dicentrarchus

DOI：

doi:10.5061/dryad.298qm

摘要：

capture across a broad phylogenetic range of species. Furthermore, our results show that the use of a third-party laboratory coupled with accessible

Data from: Range instability leads to cytonuclear discordance in a morphologically cryptic ground squirrel species complex

负责人：

关键词：

Otospermophilus douglasii;range expansion;Callospermophilus lateralis;cytonuclear discordance;phylogeography;Otospermophilus beecheyi;introgression;Otospermophilus;Otospermophilus variegatus;Pleistocene

DOI：

doi:10.5061/dryad.rp011

摘要：

The processes responsible for cytonuclear discordance frequently remain unclear. Here, we employed an exon capture dataset and demograp

Data from: Phylogenomics uncovers confidence and conflict in the rapid radiation of Australo-Papuan rodents

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关键词：

Species tree;branch support;Coalescence;incomplete lineage sorting;Concatenation;exon capture;bootstrap;Murinae

DOI：

doi:10.5061/dryad.9sj4hm8

摘要：

ially millions of sites, bootstrap support for bifurcating relationships around very short internal branches can be inappropriately inflated. Such over-estimation

Data from: Chromosomal speciation in the genomics era: disentangling phylogenetic evolution of rock-wallabies

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关键词：

divergence;chromosome rearrangement;genomics;rock-wallaby;Pliocene;Petrogale;speciation;Pleistocene

DOI：

doi:10.5061/dryad.mm856

摘要：

Petrogale. We present initial phylogenetic results from exon-capture that resolve a history of divergence associated with extensive and r

Data from: Are 100 enough? Inferring acanthomorph teleost phylogeny using Anchored Hybrid Enrichment

负责人：

关键词：

blennies;Anchored Hybrid Enrichment;Acanthomorpha;Percomorpha;Ovalentaria;Cichlidae;Cichlids;Pholidicthys;Blenniiformes;phylogenomics

DOI：

doi:10.5061/dryad.r4553

摘要：

scale datasets, some phylogenetic relationships remain difficult to resolve. Here we employ anchored phylogenomics to capture 107 nuclear loci in 29