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Data from: Molecular phylogeny of the marmots (Rodentia: Sciuridae): tests of evolutionary and biogeographic hypotheses
- 负责人:
- DOI:
- doi:10.5061/dryad.537
- 摘要:
- based methods. We conducted statistical tests on a suite of previously proposed hypotheses of phylogenetic relationships and biogeographic histories
Data from: Assessing parameter identifiability in phylogenetic models using Data Cloning
- 负责人:
- DOI:
- doi:10.5061/dryad.rr6400b4
- 摘要:
- ly, when applied to phylogenetic inference, DC can be used to study at least two important statistical questions: assessing identifiability of discrete parameters
Data from: Phylogeny, traits and biodiversity of a neotropical bat assemblage: close relatives show similar responses to local deforestation
- 负责人:
- DOI:
- doi:10.5061/dryad.mb552
- 摘要:
- on, and consideration of spatial scale. Taxonomic and phylogenetic diversity decreased with deforestation, and assemblages became more phylogenetically clustered. Species
Data from: Reticulate evolutionary history and extensive introgression in mosquito species revealed by phylogenetic network analysis
- 负责人:
- 关键词:
- Bioinfomatics/Phyloinfomatics Genomics/Proteomics Hybridization Insects Molecular Evolution Phylogenetic Theory and Methods
- DOI:
- doi:10.5061/dryad.tn47c
- 摘要:
- and introgression simultaneously, and forms the basis for statistical methods for inferring reticulate evolutionary histories. The new analysis reveal
Data from: Generalized Frequency Coding: A Method of Preparing Polymorphic Multistate Characters for Phylogenetic Analysis
- 负责人:
- DOI:
- doi:10.5061/dryad.646
- 摘要:
- A new method of coding polymorphic multistate characters for phylogenetic analysis is presented. By dividing such characters into subcharacters, thei
Data from: Assessing combinability of phylogenomic data using Bayes Factors
- 负责人:
- DOI:
- doi:10.5061/dryad.gt81779
- 摘要:
- index (D) estimated for each data set. BF effectively detects phylogenetic incongruence, and provides a way to assess the statistical significance of D values. We use
Data from: Posterior predictive checks of coalescent models: P2C2M, an R package
- 负责人:
- DOI:
- doi:10.5061/dryad.n715n
- 摘要:
- power compared to previous implementations of this approach. When probabilistic summary statistics are used, P2C2M corroborates the assumption that genealog
Data from: Effective online Bayesian phylogenetics via sequential Monte Carlo with guided proposals
- 负责人:
- DOI:
- doi:10.5061/dryad.n7n85
- 摘要:
- Modern infectious disease outbreak surveillance produces continuous streams of sequence data which require phylogenetic analysis as data arrives
Data from: Accurate inference of tree topologies from multiple sequence alignments using deep learning
- 负责人:
- DOI:
- doi:10.5061/dryad.ct2895s
- 摘要:
- to reconstruct phylogenetic trees, each with their own strengths and weaknesses. Both simulation and empirical studies have identified several “zone
Data from: Computational performance and statistical accuracy of *BEAST and comparisons with other methods
- 负责人:
- DOI:
- doi:10.5061/dryad.02tf9
- 摘要:
- but computationally intensive, so the increasing size of phylogenetic data sets is both a computational challenge and an opportunity for better systematics. Usi