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Data from: Nearly complete rRNA genes from 371 Animalia: updated structure-based alignment and phylogenetic analysis
负责人:
Mallatt, Jon M.
关键词:
28S rRNA 18S rRNA Ribosomal rRNA genes alignment secondary structure PHASE program
DOI:
doi:10.5061/dryad.1v62kr3q
摘要:
-compositional heterogeneity across taxa and from an overrepresentation of highly divergent sequences among the newly added taxa (e.g., sequences from Cephalopoda, Rotifer
Data from: Local and landscape-scale heterogeneity shape spotted wing drosophila (Drosophila suzukii) activity and natural enemy abundance
负责人:
Schmidt, Jason M.
关键词:
habitat management landscape configuration landscape heterogeniety metabarcoding molecular gut content analysis Predator-prey interactions
DOI:
doi:10.5061/dryad.52c2k52
摘要:
ment and landscape structure. Fields were nested in 1-km landscapes along gradients of crop and forest heterogeneity (landscape compositional diversity) and field border
Data from: The root of flowering plants and total evidence
负责人:
关键词:
Amborella;Systematic error;model fit;angiosperm origins;parametric simulations;total evidence approach
DOI:
doi:10.5061/dryad.vg97f
摘要:
multiple-sequence alignments that have a poor fit to time-reversible substitution models. These sites exhibit significant levels of homoplasy, compositional heterogeneity
Data from: Edge-mediated compositional and functional decay of tree assemblages in Amazonian forest islands after 26 years of isolation
负责人:
关键词:
life-history traits;tree communities.;hydropower projects;Island Biogeography;landscape attributes;Species-Area Relationship;habitat fragmentation
DOI:
doi:10.5061/dryad.2v8f9
摘要:
heterogeneity, both in terms of taxonomic and functional diversity. 3.Despite a clearly positive SAR, edge-mediated forest disturbance was the single most impo
Data from: Environmental constraints on the compositional and phylogenetic beta-diversity of tropical forest snake assemblages
负责人:
Moura, Mario
关键词:
β-diversity climatological regime ectotherm environmental filtering multiscale processes phylogenetic structure reptile species composition turnover
DOI:
doi:10.5061/dryad.fd0gb
摘要:
oning and other processes rather than environmental filtering would mediate species coexistence. We used 218 snake assemblages to quantify the compositional
Data from: Phylogenetic analysis of 47 chloroplast genomes clarifies the contribution of wild species to the domesticated apple maternal line
负责人:
关键词:
chloroplast genome phylogeny;Malus sylvestris;Malus Pyrus chloroplast;Malus domestica;Malus sieversii;apples
DOI:
doi:10.5061/dryad.33817
摘要:
m cultivated apple varieties and wild apple species. The data produced are free from compositional heterogeneity and from substitutional saturation, which
Data from: Resource specialists lead local insect community turnover associated with temperature – analysis of an 18-year full-seasonal record
负责人:
关键词:
climate change community temperature index community turnover diet specialists ecological specialization light trap phenology shift
DOI:
doi:10.5061/dryad.s4945
摘要:
and net loss of cold-dwelling species. The climate-related composition of generalists remained constant over time. We observed an increase
Data from: Species-area relationships in the Andaman and Nicobar islands emerge because rarer species are disproportionately favored on larger
负责人:
关键词:
Alpha-diversity;beta-diversity;Disproportionate effects;Gamma-diversity;Heterogeneity;Individual-based rarefaction;Island Biogeography;passive sampling;Species-area relationship.
DOI:
doi:10.5061/dryad.7m0cfxpr5
摘要:
), within-island ?-diversity did not increase with island size, suggesting that within island compositional effects were unlikely to be driving these ISARs. Overal
Data from: Phylogenomic analyses of Crassiclitellata support major Northern and Southern Hemisphere clades and a Pangaean origin for earthworms
负责人:
Anderson, Frank E.
关键词:
earthworm phylogenomics
DOI:
doi:10.5061/dryad.n7n71
摘要:
s of data partitioning, missing data, compositional and branch-length heterogeneity, and outgroup inclusion. Results and discussion: We recover a consistent, strongl
Data from: The effects of model choice and mitigating bias on the ribosomal tree of life
负责人:
关键词:
Trichoplax adhaerens;Cyanophora paradoxa;Desulfurispirillum indicum;Chlamydomonas reinhardtii;Bigelowiella natans;Cenarchaeum symbiosum;Cryptosporidium muris;Zymomonas mobilis;Nitrosoarchaeum limnia;Lactobacillus fermentum;Aspergillus flavus;Oscillibacter valericigenes;Arachnula sp;Archaeoglobus fulgidus;single-matrix model;Thermoplasma acidophilum;Paenibacillus sp;Perkinsus marinus;Corynebacterium pseudotuberculosis;Natromonas pharaonis;Staphylothermus marinus;two-domain tree;Diplonema sp;Prevotella denticola;Cyanothece sp;Ribosomal tree of life;Candida albicans;Anaerolinea thermophila;Methanocaldococcus jannaschii;Phaeodactylum tricornutum;Methylacidiphilum infernorum;Methanosarcina mazei;Dictyostelium discoideum;Chlorobium limicola;Thermotoga maritima;Methanosphaera stadtmanae;Babesia bovis;Thermodesulfatator indicus;Thermovibrio ammonificans;Flamella sp;Korarchaeum cryptofilum;Syntrophus aciditrophicus;Methanobrevibacter smithii;Deinococcus deserti;Gemmatimonas aurantiaca;Dyadobacter fermentans;Methanococcus aeolicus;Tribonema sp;Toxoplasma gondii;Acetobacter pasteurianus;Methanococcoides burtonii;Leishmania major;Thalassiosira pseudonana;Aeropyrum pernix;Nitrosomonas europaea;mixture model;Thermococcus kodakarensis;Arabidopsis thaliana;Apis mellifera;Nitrosopumilis sp;Halobacterium salinarum;Acidilobus saccharovorans;Pyrobaculum aerophilium;Fibrobacter succinogenes;Acanthamoeba sp;Idiomarina loihiensis;Ciona intestinalis;Meiothermus silvanus;Thermocrinis albus;Neisseria meningitidis;Spirochaeta coccoides;Methanopyrus kandleri;Xylella fastidiosa;Bodo sp;Ignicoccus hospitalis;Physarum polycephalum;Desulfurococcus mucosus;Danio rerio;Compositional heterogeneity;Treponema brennaborense;Sulfolobus solfataricus;Hypterthermus butylicus;Picrophilus torridus;Plasmodium vivax;Denitrovibrio acetiphilus;Haloarcula marismortui;three-domain tree;Metallosphaera sedula;Phytophthora infestans;Planctomyces brasiliensis;Thermovirga lienii;Trypanosoma brucei;Dictyoglomus thermophilum;Cryptobacterium curtum;Trimastix pyriformis;Cryptococcus gattii;Dehalococcoides ethenogenes;Pyrolobus fumarii;Guillardia theta;Methanoculleus marisingri;Thermus scotoductus;Syntrophothermus lipocalidus;Coraliomargarita akajimensis;Desulfobacca acetoxidans;Nitrosospira multiformis;Heterosigma sp;Prochlorococcus marinus;Fusobacterium nucleatum;Rhodopirellula baltica;Emiliana huxleyi;Nanoarchaeum equitans;Pyrococcus horikoshii;Ostreococcus tauri;Euglena sp
DOI:
doi:10.5061/dryad.7785h
摘要:
formed removal of fast-evolving or long-branched Archaea and Eukarya, and employed three different strategies to remove compositional heterogeneity to examine thei

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