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Data from: Discovery and information-theoretic characterization of transcription factor binding sites that act cooperatively
- 负责人：
- DOI：
- doi:10.5061/dryad.8b203
- 摘要：
- sion levels. A probabilistic approach to model protein–DNA interactions at the sequence level is through position weight matrices (PWMs) that estimate the joint probability
Data from: Construction of a virtual Mycobacterium tuberculosis consensus genome and its application to data from a next generation sequencer
- 负责人：
- 关键词：
- phylogenetic analysis;Mycobacterium tuberculosis;consensus sequence;virtual typing;SNP concatemer
- DOI：
- doi:10.5061/dryad.nq070
- 摘要：
- of the M. tuberculosis complexes (MTBCs) strains available on databases were aligned to construct virtual reference genome sequences called the consensus sequence (CS
Data from: Minimizing the average distance to a closest leaf in a phylogenetic tree
- 负责人：
- DOI：
- doi:10.5061/dryad.md023
- 摘要：
- When performing an analysis on a collection of molecular sequences, it can be convenient to reduce the number of sequences under consideration
Data from: PROTAX-fungi: a web-based tool for probabilistic taxonomic placement of fungal ITS sequences
- 负责人：
- DOI：
- doi:10.5061/dryad.9dr6j0c
- 摘要：
- ? Incompleteness of reference sequence databases and unresolved taxonomic relationships complicates taxonomic placement of fungal sequences
Data from: Raw whole Drosophila genome sequence traces have contaminant sequences from bacterial symbionts
- 负责人：
- DOI：
- doi:10.5061/dryad.8085
- 摘要：
- Many Drosophila genomes have been sequenced and assembled recently, and many more genome sequencing projects are in progress. However, Drosophila hav
Data from: Unforeseen consequences of excluding missing data from next-generation sequences: simulation study of RAD sequences
- 负责人：
- DOI：
- doi:10.5061/dryad.jf361
- 摘要：
- simulations, focusing specifically on RAD sequences, to highlight some of the unforeseen consequence of excluding missing data from next-generation sequencing
Data from: Allele phasing has minimal impact on phylogenetic reconstruction from targeted nuclear gene sequences in a case study of Artocarpus
- 负责人：
- 关键词：
- Artocarpus;incomplete lineage sorting;Target Enrichment;phylogenetics;allele phasing;HybSeq;alleles
- DOI：
- doi:10.5061/dryad.r8q72
- 摘要：
- luding heterozygosity in phylogenetic studies and present a novel method for assembling allele sequences from target enriched Illumina sequencing libraries. Methods
Data from: Finding stories in noise: mitochondrial portraits from RAD data
- 负责人：
- DOI：
- doi:10.5061/dryad.75fh336
- 摘要：
- of mitochondrial sequences. Most researchers using this approach appear to be unaware that many Single Nucleotide Polymorphisms (SNPs) identified from genome-wide sequence
Data from: A first look at the Oxford Nanopore MinION sequencer
- 负责人：
- DOI：
- doi:10.5061/dryad.5p0c3
- 摘要：
- Oxford Nanopore's third-generation, single-molecule sequencing platform promises to decrease costs for reagents and instrumentation. After a two-yea
nchor: a novel approach for whole-genome comparative mapping utilising evolutionarily conserved DNA sequences"" data-category="" data-cropid="" data-dimen="" data-id="259A5B2C-B6B6-492D-834C-D41955585C5A"> Supporting data for "G-Anchor: a novel approach for whole-genome comparative mapping utilising evolutionarily conserved DNA sequences"
- 负责人：
- 关键词：
- Genome-Mapping Metabolomic Software Workflow whole-genome alignment sequence mapping sequencing anchoring highly conserved elements (hce) genome evolution
- DOI：
- doi:10.5524/100415
- 摘要：
- Cross-species whole-genome sequence alignment is a critical first step for genome comparative analyses ranging from the detection
