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Data from: Phylogenetic marker development for target enrichment from transcriptome and genome skim data: the pipeline and its applic
负责人:
关键词:
Species tree;cytonuclear discordance;Target Enrichment;low-copy nuclear genes;Oxalis;genome skimming
DOI:
doi:10.5061/dryad.dn08t
摘要:
nes greater than 600 bp. Using target enrichment combined with genome skimming (Hyb-Seq), we obtained on average 1141 LCN loci, nearly the whole
Data from: Exon capture phylogenomics: efficacy across scales of divergence
负责人:
关键词:
Reptiles;Genomics\/Proteomics;skinks;Phylogenetic Theory and Methods;Bioinfomatics\/Phyloinfomatics;Eugongylus
DOI:
doi:10.5061/dryad.34274
摘要:
. High Throughput Sequencing (HTS) is now providing opportunities to incorporate thousands of loci in ‘phylogenomic’ studies. Here, we used target enrichment to sequence c.3000
Data from: Microfluidic PCR-based target enrichment: a case study in two rapid radiations of Commiphora (Burseraceae) from Madagascar
负责人:
关键词:
Illumina MiSeq;microfluidic PCR;genome-tagged amplification;Miocene;Burseraceae;targeted amplicon sequencing;Commiphora;phylogenomics;Bursera
DOI:
doi:10.5061/dryad.591q3
摘要:
. Here we describe the development and validation of a novel set of 91 nuclear markers for PCR-based target enrichment. Using microfluidic PCR
Data from: A customized nuclear target enrichment approach for developing a phylogenomic baseline for Dioscorea yams (Dioscoreaceae)
负责人:
关键词:
Dioscoreales;herbarium;Hyb-Seq;tuber crop wild relatives;ortholog identification;Dioscorea target capture kit;monocot phylogenomics
DOI:
doi:10.5061/dryad.4n2fk97
摘要:
Premise of the study: We developed a target enrichment panel for phylogenomic studies of Dioscorea, an economically important genus with incompletely
Data from: Evaluating the performance of anchored hybrid enrichment at the tips of the tree of life: a phylogenetic analysis of Australian Eugongylus
负责人:
关键词:
DOI:
doi:10.5061/dryad.g4mj2
摘要:
Background: High-throughput sequencing using targeted enrichment and transcriptomic methods enables rapid construction of phylogenomic data
Data from: Resolving relationships among the megadiverse butterflies and moths with a novel pipeline for Anchored Phylogenomics
负责人:
关键词:
sequence capture;target capture;ultraconserved elements;hybrid enrichment;Lepidoptera;Transcriptomics;Bombycoidea;exon;phylogenomics
DOI:
doi:10.5061/dryad.rf7g5
摘要:
enrichment and transcriptomics are two techniques that leverage next-generation sequencing and have shown much promise. However, methods for processing hybrid
Data from: Mitochondrial capture enriches mito-DNA 100 folds enabling PCR-free mitogenomics biodiversity analysis
负责人:
关键词:
mitogenomics;mitochondrial genome;gene capture;biodiversity
DOI:
doi:10.5061/dryad.19nf6
摘要:
, which can alleviate taxonomic bias, was considered as a promising approach to delivering reliable species compositions of targeted environments. The major
Data from: Allele phasing has minimal impact on phylogenetic reconstruction from targeted nuclear gene sequences in a case study of Artocarpus
负责人:
关键词:
Artocarpus;incomplete lineage sorting;Target Enrichment;phylogenetics;allele phasing;HybSeq;alleles
DOI:
doi:10.5061/dryad.r8q72
摘要:
target enrichment data and for assessing the contribution of allelic diversity to phylogenetic reconstruction. In our dataset, the impact of allele phasing
Data from: Target enrichment of ultraconserved elements from arthropods provides a genomic perspective on relationships among Hymenoptera
负责人:
关键词:
ultraconserved elements UCEs target enrichment baits probes arthropods conserved sequence
DOI:
doi:10.5061/dryad.46195
摘要:
target enrichment of conserved genomic elements offers another path to collecting phylogenomic data across insect taxa, provided that conserved elements are present
Hymenopteran UCE sequences
负责人:
BGI
关键词:
Targeted Locus (Loci) Multispecies
DOI:
doi:10.26036/cnphis0001693
摘要:
target enrichment of conserved genomic elements offers another path to collecting phylogenomic data across insect taxa, provided that conserved elements are present

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